دورية أكاديمية

Dynamic regulation of inter-organelle communication by ubiquitylation controls skeletal muscle development and disease onset.

التفاصيل البيبلوغرافية
العنوان: Dynamic regulation of inter-organelle communication by ubiquitylation controls skeletal muscle development and disease onset.
المؤلفون: Mansur A; Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, United States., Joseph R; Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, United States., Kim ES; Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, United States., Jean-Beltran PM; Proteomics Platform, Broad Institute of MIT and Harvard, Cambridge, United States., Udeshi ND; Proteomics Platform, Broad Institute of MIT and Harvard, Cambridge, United States., Pearce C; Proteomics Platform, Broad Institute of MIT and Harvard, Cambridge, United States., Jiang H; Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, United States.; Department of Pharmacology and Molecular Sciences, Johns Hopkins University School of Medicine, Boston, United States., Iwase R; Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, United States.; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, United States., Milev MP; Department of Biology, Concordia University of Edmonton, Montreal, Canada., Almousa HA; Department of Biology, Concordia University of Edmonton, Montreal, Canada., McNamara E; Faculty of Health and Medical Sciences, Centre of Medical Research, Harry Perkins Institute of Medical Research, University of Western Australia, Perth, Australia., Widrick J; Division of Genetics, Boston Children's Hospital, Harvard Medical School, Boston, United States., Perez C; Department of Anesthesiology, Brigham and Women's Hospital, Harvard Medical School, Boston, United States., Ravenscroft G; Faculty of Health and Medical Sciences, Centre of Medical Research, Harry Perkins Institute of Medical Research, University of Western Australia, Perth, Australia., Sacher M; Department of Biology, Concordia University of Edmonton, Montreal, Canada.; Department of Anatomy and Cell Biology, McGill University, Montreal, Canada., Cole PA; Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, United States., Carr SA; Proteomics Platform, Broad Institute of MIT and Harvard, Cambridge, United States., Gupta VA; Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, United States.
المصدر: ELife [Elife] 2023 Jul 11; Vol. 12. Date of Electronic Publication: 2023 Jul 11.
نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet ISSN: 2050-084X (Electronic) Linking ISSN: 2050084X NLM ISO Abbreviation: Elife Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Cambridge, UK : eLife Sciences Publications, Ltd., 2012-
مواضيع طبية MeSH: Muscle Proteins*/genetics , Muscle Proteins*/metabolism , Zebrafish*/metabolism, Animals ; Humans ; Proteome/metabolism ; Muscle, Skeletal/metabolism ; Ubiquitination ; Sarcomeres/metabolism ; Ubiquitin/metabolism ; Endoplasmic Reticulum/metabolism ; Muscle Development ; Disease Progression
مستخلص: Ubiquitin-proteasome system (UPS) dysfunction is associated with the pathology of a wide range of human diseases, including myopathies and muscular atrophy. However, the mechanistic understanding of specific components of the regulation of protein turnover during development and disease progression in skeletal muscle is unclear. Mutations in KLHL40 , an E3 ubiquitin ligase cullin3 (CUL3) substrate-specific adapter protein, result in severe congenital nemaline myopathy, but the events that initiate the pathology and the mechanism through which it becomes pervasive remain poorly understood. To characterize the KLHL40-regulated ubiquitin-modified proteome during skeletal muscle development and disease onset, we used global, quantitative mass spectrometry-based ubiquitylome and global proteome analyses of klhl40a mutant zebrafish during disease progression. Global proteomics during skeletal muscle development revealed extensive remodeling of functional modules linked with sarcomere formation, energy, biosynthetic metabolic processes, and vesicle trafficking. Combined analysis of klh40 mutant muscle proteome and ubiquitylome identified thin filament proteins, metabolic enzymes, and ER-Golgi vesicle trafficking pathway proteins regulated by ubiquitylation during muscle development. Our studies identified a role for KLHL40 as a regulator of ER-Golgi anterograde trafficking through ubiquitin-mediated protein degradation of secretion-associated Ras-related GTPase1a (Sar1a). In KLHL40-deficient muscle, defects in ER exit site vesicle formation and downstream transport of extracellular cargo proteins result in structural and functional abnormalities. Our work reveals that the muscle proteome is dynamically fine-tuned by ubiquitylation to regulate skeletal muscle development and uncovers new disease mechanisms for therapeutic development in patients.
Competing Interests: AM, RJ, EK, PJ, NU, CP, HJ, RI, MM, HA, EM, JW, CP, GR, MS, PC, SC, VG No competing interests declared
(© 2023, Mansur et al.)
References: J Clin Invest. 2000 Dec;106(11):1351-9. (PMID: 11104788)
Skelet Muscle. 2018 May 31;8(1):17. (PMID: 29855340)
Nat Protoc. 2018 Jul;13(7):1632-1661. (PMID: 29988108)
F1000Res. 2018 Dec 11;7:. (PMID: 30631434)
Cell Stress Chaperones. 2022 Nov;27(6):603-618. (PMID: 36149580)
Am J Hum Genet. 2002 Nov;71(5):1033-43. (PMID: 12369018)
J Med Genet. 2018 Aug;55(8):505-514. (PMID: 29959180)
Neurology. 2016 Nov 22;87(21):2235-2243. (PMID: 27784775)
J Med Genet. 2005 Dec;42(12):907-12. (PMID: 15894594)
Nature. 2012 Feb 22;482(7386):495-500. (PMID: 22358839)
EMBO Mol Med. 2021 Dec 7;13(12):e13787. (PMID: 34779586)
Orphanet J Rare Dis. 2011 Jan 14;6:1. (PMID: 21235735)
Nat Biotechnol. 2013 Mar;31(3):227-9. (PMID: 23360964)
Traffic. 2021 Mar;22(3):64-77. (PMID: 33314495)
Mol Biol Cell. 2023 Mar 1;34(3):br4. (PMID: 36652337)
Proc Natl Acad Sci U S A. 2013 Nov 19;110(47):18982-7. (PMID: 24191061)
J Med Genet. 2021 Sep;58(9):609-618. (PMID: 33060286)
Neuropathol Appl Neurobiol. 2003 Feb;29(1):45-51. (PMID: 12581339)
Hum Genet. 2016 Feb;135(2):245-251. (PMID: 26742501)
Nature. 1993 Sep 23;365(6444):347-9. (PMID: 8377826)
Traffic. 2013 Jun;14(6):691-708. (PMID: 23433038)
Nat Commun. 2020 Jan 17;11(1):359. (PMID: 31953384)
Nat Genet. 1999 Oct;23(2):208-12. (PMID: 10508519)
Curr Protoc Cell Biol. 2012 Dec;Chapter 15:15.19.1-15.19.16. (PMID: 23208546)
Am J Hum Genet. 2013 Jun 6;92(6):946-54. (PMID: 23664116)
Cell. 2021 Aug 5;184(16):4348-4371.e40. (PMID: 34358469)
Am J Hum Genet. 2013 Dec 5;93(6):1108-17. (PMID: 24268659)
Cell. 1994 Jun 17;77(6):895-907. (PMID: 8004676)
Nat Metab. 2020 Sep;2(9):817-828. (PMID: 32747792)
Proc Natl Acad Sci U S A. 2018 Oct 23;115(43):E10099-E10108. (PMID: 30287488)
PLoS One. 2015 Apr 10;10(4):e0123875. (PMID: 25859846)
PLoS One. 2010 Nov 15;5(11):e13984. (PMID: 21085593)
Nat Commun. 2022 Feb 17;13(1):947. (PMID: 35177647)
Nucleic Acids Res. 2019 Jul 2;47(W1):W191-W198. (PMID: 31066453)
Nucleic Acids Res. 2015 Apr 20;43(7):e47. (PMID: 25605792)
Hum Mol Genet. 2015 Jul 1;24(13):3638-50. (PMID: 25801283)
Nat Genet. 2003 May;34(1):29-31. (PMID: 12692552)
Nature. 2020 Aug;584(7819):98-101. (PMID: 32581357)
J Biol Chem. 2012 Mar 23;287(13):10134-10144. (PMID: 22298774)
Am J Hum Genet. 2013 Jun 6;92(6):965-73. (PMID: 23664120)
Compr Physiol. 2017 Jun 18;7(3):891-944. (PMID: 28640448)
Dev Cell. 2020 Jul 20;54(2):282-292. (PMID: 32693060)
J Mol Med (Berl). 2015 Feb;93(2):165-76. (PMID: 25559265)
Circulation. 2020 Mar 10;141(10):828-842. (PMID: 31983222)
Cell. 2005 Aug 26;122(4):605-17. (PMID: 16122427)
PLoS Genet. 2018 Feb 8;14(2):e1007212. (PMID: 29420541)
Annu Rev Genet. 2004;38:615-43. (PMID: 15568988)
Dev Dyn. 2014 Feb;243(2):201-15. (PMID: 24038488)
Cell. 1998 Apr 17;93(2):263-75. (PMID: 9568718)
Am J Hum Genet. 2008 Jan;82(1):222-7. (PMID: 18179903)
Am J Hum Genet. 2013 Jul 11;93(1):181-90. (PMID: 23830518)
J Cachexia Sarcopenia Muscle. 2022 Feb;13(1):454-466. (PMID: 35001540)
Am J Hum Genet. 2013 Jul 11;93(1):6-18. (PMID: 23746549)
Nature. 2019 Apr;568(7751):193-197. (PMID: 30944477)
PLoS One. 2018 Jun 26;13(6):e0199712. (PMID: 29944715)
Genome Res. 2003 Nov;13(11):2498-504. (PMID: 14597658)
Mech Dev. 2015 Aug;137:33-44. (PMID: 25892297)
Bio Protoc. 2021 Sep 05;11(17):e4149. (PMID: 34604454)
Clin Genet. 2021 Dec;100(6):748-751. (PMID: 34424553)
Hum Mol Genet. 2019 Aug 1;28(15):2549-2560. (PMID: 30986853)
Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13570-5. (PMID: 23901116)
Trends Mol Med. 2019 Sep;25(9):760-774. (PMID: 31235369)
Mol Cell Proteomics. 2019 Jul;18(7):1468-1478. (PMID: 30967486)
Cell. 2021 Apr 29;184(9):2412-2429.e16. (PMID: 33852913)
J Biol Chem. 2020 Jun 19;295(25):8401-8412. (PMID: 32358066)
Pediatr Ann. 2020 Jul 1;49(7):e299-e304. (PMID: 32674167)
Am J Hum Genet. 2002 Mar;70(3):663-72. (PMID: 11822024)
Elife. 2023 Jul 11;12:. (PMID: 37432316)
Brain. 2010 Jul;133(Pt 7):2123-35. (PMID: 20554658)
J Clin Invest. 2014 Aug;124(8):3529-39. (PMID: 24960163)
Nat Commun. 2017 Oct 20;8(1):1068. (PMID: 29051551)
Development. 2008 Mar;135(5):849-57. (PMID: 18216171)
PLoS Genet. 2018 Mar 8;14(3):e1007226. (PMID: 29518074)
Proc Natl Acad Sci U S A. 1999 Mar 2;96(5):2305-10. (PMID: 10051637)
معلومات مُعتمدة: R37GM62437 United States NH NIH HHS; R01CA74305 United States CA NCI NIH HHS; F32 HL154711 United States HL NHLBI NIH HHS; F32HL154711 United States HL NHLBI NIH HHS; R37 GM062437 United States GM NIGMS NIH HHS; R01 CA074305 United States CA NCI NIH HHS; R56AR077017 United States AR NIAMS NIH HHS; R56 AR077017 United States AR NIAMS NIH HHS
فهرسة مساهمة: Keywords: cell biology; developmental biology; genetic disease; myopathy; skeletal muscle; ubiquitylation; zebrafish
المشرفين على المادة: 0 (Muscle Proteins)
0 (Proteome)
0 (Ubiquitin)
0 (KLHL40 protein, human)
تواريخ الأحداث: Date Created: 20230711 Date Completed: 20230721 Latest Revision: 20230721
رمز التحديث: 20231215
مُعرف محوري في PubMed: PMC10356137
DOI: 10.7554/eLife.81966
PMID: 37432316
قاعدة البيانات: MEDLINE
الوصف
تدمد:2050-084X
DOI:10.7554/eLife.81966