دورية أكاديمية
Contrasting whole-genome and reduced representation sequencing for population demographic and adaptive inference: an alpine mammal case study.
العنوان: | Contrasting whole-genome and reduced representation sequencing for population demographic and adaptive inference: an alpine mammal case study. |
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المؤلفون: | Martchenko D; Environmental and Life Sciences Graduate Program, Trent University, 2140 East Bank Drive, Peterborough, ON, K9J 7B8, Canada. dariamartchenko@trentu.ca., Shafer ABA; Environmental and Life Sciences Graduate Program, Trent University, 2140 East Bank Drive, Peterborough, ON, K9J 7B8, Canada.; Department of Forensics & Environmental and Life Sciences Graduate Program, Trent University, 2140 East Bank Drive, Peterborough, ON, K9J 7B8, Canada. |
المصدر: | Heredity [Heredity (Edinb)] 2023 Oct; Vol. 131 (4), pp. 273-281. Date of Electronic Publication: 2023 Aug 02. |
نوع المنشور: | Journal Article |
اللغة: | English |
بيانات الدورية: | Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0373007 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1365-2540 (Electronic) Linking ISSN: 0018067X NLM ISO Abbreviation: Heredity (Edinb) Subsets: MEDLINE |
أسماء مطبوعة: | Publication: <2003->: London : Nature Publishing Group Original Publication: London, Oliver and Boyd. |
مستخلص: | Genomes capture the adaptive and demographic history of a species, but the choice of sequencing strategy and sample size can impact such inferences. We compared whole genome and reduced representation sequencing approaches to study the population demographic and adaptive signals of the North American mountain goat (Oreamnos americanus). We applied the restriction site-associated DNA sequencing (RADseq) approach to 254 individuals and whole genome resequencing (WGS) approach to 35 individuals across the species range at mid-level coverage (9X) and to 5 individuals at high coverage (30X). We used ANGSD to estimate the genotype likelihoods and estimated the effective population size (N (© 2023. The Author(s), under exclusive licence to The Genetics Society.) |
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تواريخ الأحداث: | Date Created: 20230802 Latest Revision: 20231003 |
رمز التحديث: | 20240628 |
مُعرف محوري في PubMed: | PMC10539292 |
DOI: | 10.1038/s41437-023-00643-4 |
PMID: | 37532838 |
قاعدة البيانات: | MEDLINE |
تدمد: | 1365-2540 |
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DOI: | 10.1038/s41437-023-00643-4 |