دورية أكاديمية

The H-NOX protein structure adapts to different mechanisms in sensors interacting with nitric oxide.

التفاصيل البيبلوغرافية
العنوان: The H-NOX protein structure adapts to different mechanisms in sensors interacting with nitric oxide.
المؤلفون: Yoo BK; Laboratoire d'Optique et Biosciences, INSERM U-1182, Ecole Polytechnique 91120 Palaiseau France michel.negrerie@polytechnique.edu., Kruglik SG; Laboratoire Jean Perrin, Institut de Biologie Paris-Seine, Sorbonne Université, CNRS 75005 Paris France., Lambry JC; Laboratoire d'Optique et Biosciences, INSERM U-1182, Ecole Polytechnique 91120 Palaiseau France michel.negrerie@polytechnique.edu., Lamarre I; Laboratoire d'Optique et Biosciences, INSERM U-1182, Ecole Polytechnique 91120 Palaiseau France michel.negrerie@polytechnique.edu., Raman CS; Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland Baltimore Maryland 21201 USA., Nioche P; Environmental Toxicity, Therapeutic Targets, Cellular Signaling and Biomarkers, UMR S1124, Centre Universitaire des Saints-Pères, Université Paris Descartes 75006 Paris France.; Structural and Molecular Analysis Platform, BioMedTech Facilities, INSERM US36-CNRS-UMS2009, Paris Université Paris France., Negrerie M; Laboratoire d'Optique et Biosciences, INSERM U-1182, Ecole Polytechnique 91120 Palaiseau France michel.negrerie@polytechnique.edu.
المصدر: Chemical science [Chem Sci] 2023 Jul 13; Vol. 14 (31), pp. 8408-8420. Date of Electronic Publication: 2023 Jul 13 (Print Publication: 2023).
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Royal Society of Chemistry Country of Publication: England NLM ID: 101545951 Publication Model: eCollection Cited Medium: Print ISSN: 2041-6520 (Print) Linking ISSN: 20416520 NLM ISO Abbreviation: Chem Sci Subsets: PubMed not MEDLINE
أسماء مطبوعة: Original Publication: Cambridge, UK : Royal Society of Chemistry, [2010]-
مستخلص: Some classes of bacteria within phyla possess protein sensors identified as homologous to the heme domain of soluble guanylate cyclase, the mammalian NO-receptor. Named H-NOX domain (Heme-Nitric Oxide or OXygen-binding), their heme binds nitric oxide (NO) and O 2 for some of them. The signaling pathways where these proteins act as NO or O 2 sensors appear various and are fully established for only some species. Here, we investigated the reactivity of H-NOX from bacterial species toward NO with a mechanistic point of view using time-resolved spectroscopy. The present data show that H-NOXs modulate the dynamics of NO as a function of temperature, but in different ranges, changing its affinity by changing the probability of NO rebinding after dissociation in the picosecond time scale. This fundamental mechanism provides a means to adapt the heme structural response to the environment. In one particular H-NOX sensor the heme distortion induced by NO binding is relaxed in an ultrafast manner (∼15 ps) after NO dissociation, contrarily to other H-NOX proteins, providing another sensing mechanism through the H-NOX domain. Overall, our study links molecular dynamics with functional mechanism and adaptation.
Competing Interests: There are no conflicts to declare.
(This journal is © The Royal Society of Chemistry.)
References: J Am Chem Soc. 2013 Feb 27;135(8):3248-54. (PMID: 23373628)
Proc Natl Acad Sci U S A. 2004 Aug 31;101(35):12854-9. (PMID: 15326296)
Proc Natl Acad Sci U S A. 2014 Oct 7;111(40):E4156-64. (PMID: 25253889)
Biochemistry. 2019 Dec 3;58(48):4827-4841. (PMID: 31682418)
ACS Chem Biol. 2016 Aug 19;11(8):2337-46. (PMID: 27328180)
Int J Syst Evol Microbiol. 2004 Mar;54(Pt 2):467-474. (PMID: 15023962)
Methods Enzymol. 2005;396:478-92. (PMID: 16291255)
Biochemistry. 2004 Aug 10;43(31):10203-11. (PMID: 15287748)
Biochemistry. 2007 Dec 4;46(48):13677-83. (PMID: 17988156)
Proc Natl Acad Sci U S A. 2010 May 4;107(18):8375-80. (PMID: 20404170)
J Phys Chem B. 2012 Apr 5;116(13):4106-14. (PMID: 22394099)
Nature. 2004 Jul 15;430(6997):317-22. (PMID: 15220933)
Biochemistry. 2013 May 21;52(20):3601-8. (PMID: 23614626)
J Biol Chem. 2012 Feb 24;287(9):6851-9. (PMID: 22223482)
EMBO J. 2007 Jan 24;26(2):578-88. (PMID: 17215864)
Biochemistry. 2010 Aug 10;49(31):6587-99. (PMID: 20572679)
Chem Rev. 2015 Jul 8;115(13):6491-533. (PMID: 26021768)
Hypertension. 1990 Nov;16(5):477-83. (PMID: 1977698)
Biophys J. 1993 Nov;65(5):1942-50. (PMID: 8298023)
Nature. 2019 Oct;574(7777):206-210. (PMID: 31514202)
Biochemistry. 2014 Apr 8;53(13):2126-35. (PMID: 24628400)
J Biol Chem. 2001 Dec 14;276(50):46815-21. (PMID: 11590135)
Biochemistry. 1996 Feb 6;35(5):1540-7. (PMID: 8634285)
Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12771-6. (PMID: 12271121)
J Phys Chem B. 2006 Jun 29;110(25):12766-81. (PMID: 16800612)
Proc Natl Acad Sci U S A. 2009 Nov 24;106(47):19753-60. (PMID: 19918063)
J Biol Chem. 2007 Feb 16;282(7):5053-5062. (PMID: 17158883)
Protein Sci. 2010 Apr;19(4):881-7. (PMID: 20162612)
Commun Chem. 2021 Mar 5;4(1):31. (PMID: 36697566)
BMC Genomics. 2003 Feb 03;4(1):5. (PMID: 12590654)
ACS Chem Biol. 2008 Nov 21;3(11):703-10. (PMID: 19032091)
Proc Natl Acad Sci U S A. 2021 Apr 6;118(14):. (PMID: 33782122)
Biochemistry. 2019 Apr 30;58(17):2250-2259. (PMID: 30946781)
Biochemistry. 1998 Nov 17;37(46):16289-97. (PMID: 9819221)
J Comput Chem. 2009 Jul 30;30(10):1545-614. (PMID: 19444816)
J Inorg Biochem. 2005 Apr;99(4):892-902. (PMID: 15811506)
Biochemistry. 2007 Dec 25;46(51):15115-22. (PMID: 18044974)
Chem Sci. 2017 Mar 1;8(3):1986-1994. (PMID: 28451315)
Chembiochem. 2019 Jan 2;20(1):7-19. (PMID: 30320963)
Biochemistry. 2012 Mar 13;51(10):2087-99. (PMID: 22360279)
Biochemistry. 1997 Aug 19;36(33):10155-60. (PMID: 9254612)
Proc Natl Acad Sci U S A. 1999 Dec 21;96(26):14753-8. (PMID: 10611285)
ACS Chem Biol. 2012 Aug 17;7(8):1331-6. (PMID: 22606970)
Science. 2004 Nov 26;306(5701):1550-3. (PMID: 15472039)
Chem Sci. 2019 Jan 21;10(10):3031-3041. (PMID: 30996884)
Nat Commun. 2021 Sep 17;12(1):5492. (PMID: 34535643)
J Phys Chem B. 2016 Apr 28;120(16):3844-53. (PMID: 27035523)
Metallomics. 2019 May 22;11(5):868-893. (PMID: 30957812)
Biochemistry. 2015 Dec 8;54(48):7098-109. (PMID: 26574914)
Biophys J. 2007 Dec 15;93(12):4404-13. (PMID: 17766351)
Biochemistry. 2000 Apr 11;39(14):4191-8. (PMID: 10747811)
Proc Natl Acad Sci U S A. 2007 May 1;104(18):7408-13. (PMID: 17446273)
Biochemistry. 1988 May 31;27(11):4049-60. (PMID: 3415972)
Front Mol Biosci. 2022 Oct 11;9:1007768. (PMID: 36304925)
Int J Syst Evol Microbiol. 2001 Jul;51(Pt 4):1335-1341. (PMID: 11491330)
Biochemistry. 2012 Jan 10;51(1):172-86. (PMID: 22111978)
ACS Chem Biol. 2012 Dec 21;7(12):2046-54. (PMID: 23009307)
Acc Chem Res. 2015 Jul 21;48(7):1845-52. (PMID: 26083801)
Proc Natl Acad Sci U S A. 2014 May 6;111(18):6570-5. (PMID: 24753591)
Phys Chem Chem Phys. 2017 Aug 16;19(32):21317-21334. (PMID: 28759066)
Chem Sci. 2016 Aug 1;7(8):5332-5340. (PMID: 30155185)
Proc Natl Acad Sci U S A. 2015 Apr 7;112(14):E1697-704. (PMID: 25831539)
Proc Natl Acad Sci U S A. 2010 Aug 3;107(31):13678-83. (PMID: 20643970)
J Phys Chem B. 2016 Jun 23;120(24):5351-8. (PMID: 27229134)
J Biol Chem. 2006 Aug 4;281(31):21892-21902. (PMID: 16728401)
J Biol Chem. 2007 Jan 12;282(2):897-907. (PMID: 17098738)
Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16754-9. (PMID: 12477933)
تواريخ الأحداث: Date Created: 20230811 Latest Revision: 20230812
رمز التحديث: 20231215
مُعرف محوري في PubMed: PMC10411614
DOI: 10.1039/d3sc01685d
PMID: 37564404
قاعدة البيانات: MEDLINE
الوصف
تدمد:2041-6520
DOI:10.1039/d3sc01685d