دورية أكاديمية

Post-zygotic rescue of meiotic errors causes brain mosaicism and focal epilepsy.

التفاصيل البيبلوغرافية
العنوان: Post-zygotic rescue of meiotic errors causes brain mosaicism and focal epilepsy.
المؤلفون: Miller KE; Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH, USA.; Department of Pediatrics, The Ohio State University, Columbus, OH, USA., Rivaldi AC; Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH, USA., Shinagawa N; Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH, USA., Sran S; Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH, USA., Navarro JB; Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH, USA., Westfall JJ; Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH, USA., Miller AR; Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH, USA., Roberts RD; Department of Pediatrics, The Ohio State University, Columbus, OH, USA., Akkari Y; Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH, USA., Supinger R; Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH, USA., Hester ME; Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH, USA.; Department of Pediatrics, The Ohio State University, Columbus, OH, USA., Marhabaie M; Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH, USA., Gade M; Division of Pharmacotherapy and Experimental Therapeutics in the Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA., Lu J; Division of Pharmacotherapy and Experimental Therapeutics in the Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA., Rodziyevska O; Division of Child Neurology, Department of Pediatrics, McGovern Medical School, Houston, TX, USA., Bhattacharjee MB; Department of Pathology and Laboratory Medicine, McGovern Medical School, Houston, TX, USA., Von Allmen GK; Division of Child Neurology, Department of Pediatrics, McGovern Medical School, Houston, TX, USA.; Department of Neurology, McGovern Medical School, Houston, TX, USA., Yang E; Department of Radiology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA., Lidov HGW; Department of Pathology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA., Harini C; Department of Neurology, Boston Children's Hospital, Boston, MA, USA., Shah MN; Departments of Pediatric Surgery and Neurosurgery, McGovern Medical School, Houston, TX, USA., Leonard J; Department of Neurosurgery, Nationwide Children's Hospital, Columbus, OH, USA.; Department of Neurosurgery, The Ohio State University College of Medicine, Columbus, OH, USA., Pindrik J; Department of Neurosurgery, Nationwide Children's Hospital, Columbus, OH, USA.; Department of Neurosurgery, The Ohio State University College of Medicine, Columbus, OH, USA., Shaikhouni A; Department of Neurosurgery, Nationwide Children's Hospital, Columbus, OH, USA.; Department of Neurosurgery, The Ohio State University College of Medicine, Columbus, OH, USA., Goldman JE; Department of Pathology and Cell Biology, Columbia University, New York, NY, USA., Pierson CR; Department of Pathology and Laboratory Medicine, Nationwide Children's Hospital, Columbus, OH, USA.; Department of Pathology, The Ohio State University College of Medicine, Columbus, OH, USA.; Department of Biomedical Education & Anatomy, Division of Anatomy, The Ohio State University College of Medicine, Columbus, OH, USA., Thomas DL; Department of Pathology and Laboratory Medicine, Nationwide Children's Hospital, Columbus, OH, USA.; Department of Pathology, The Ohio State University College of Medicine, Columbus, OH, USA., Boué DR; Department of Pathology and Laboratory Medicine, Nationwide Children's Hospital, Columbus, OH, USA.; Department of Pathology, The Ohio State University College of Medicine, Columbus, OH, USA., Ostendorf AP; Department of Pediatrics, The Ohio State University, Columbus, OH, USA.; Division of Pediatric Neurology, Nationwide Children's Hospital, Columbus, OH, USA., Mardis ER; Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH, USA.; Department of Neurosurgery, The Ohio State University College of Medicine, Columbus, OH, USA., Poduri A; Department of Neurology, Boston Children's Hospital, Boston, MA, USA., Koboldt DC; Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH, USA.; Department of Pediatrics, The Ohio State University, Columbus, OH, USA., Heinzen EL; Division of Pharmacotherapy and Experimental Therapeutics in the Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. erin-h@email.unc.edu.; Department of Genetics in the School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. erin-h@email.unc.edu., Bedrosian TA; Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH, USA. tracy.bedrosian@nationwidechildrens.org.; Department of Pediatrics, The Ohio State University, Columbus, OH, USA. tracy.bedrosian@nationwidechildrens.org.
المصدر: Nature genetics [Nat Genet] 2023 Nov; Vol. 55 (11), pp. 1920-1928. Date of Electronic Publication: 2023 Oct 23.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Nature Pub. Co Country of Publication: United States NLM ID: 9216904 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1718 (Electronic) Linking ISSN: 10614036 NLM ISO Abbreviation: Nat Genet Subsets: MEDLINE
أسماء مطبوعة: Original Publication: New York, NY : Nature Pub. Co., c1992-
مواضيع طبية MeSH: Mosaicism* , Epilepsies, Partial*/genetics, Humans ; Mouth Mucosa ; Mutation ; Brain
مستخلص: Somatic mosaicism is a known cause of neurological disorders, including developmental brain malformations and epilepsy. Brain mosaicism is traditionally attributed to post-zygotic genetic alterations arising in fetal development. Here we describe post-zygotic rescue of meiotic errors as an alternate origin of brain mosaicism in patients with focal epilepsy who have mosaic chromosome 1q copy number gains. Genomic analysis showed evidence of an extra parentally derived chromosome 1q allele in the resected brain tissue from five of six patients. This copy number gain is observed only in patient brain tissue, but not in blood or buccal cells, and is strongly enriched in astrocytes. Astrocytes carrying chromosome 1q gains exhibit distinct gene expression signatures and hyaline inclusions, supporting a novel genetic association for astrocytic inclusions in epilepsy. Further, these data demonstrate an alternate mechanism of brain chromosomal mosaicism, with parentally derived copy number gain isolated to brain, reflecting rescue in other tissues during development.
(© 2023. The Author(s), under exclusive licence to Springer Nature America, Inc.)
References: Bae, T. et al. Different mutational rates and mechanisms in human cells at pregastrulation and neurogenesis. Science 359, 550–555 (2018). (PMID: 2921758710.1126/science.aan8690)
D’Gama, A. M. & Walsh, C. A. Somatic mosaicism and neurodevelopmental disease. Nat. Neurosci. 21, 1504–1514 (2018). (PMID: 3034910910.1038/s41593-018-0257-3)
Kobow, K. et al. Mosaic trisomy of chromosome 1q in human brain tissue associates with unilateral polymicrogyria, very early-onset focal epilepsy, and severe developmental delay. Acta Neuropathol. 140, 881–891 (2020). (PMID: 32979071766628110.1007/s00401-020-02228-5)
Poduri, A. et al. Somatic activation of AKT3 causes hemispheric developmental brain malformations. Neuron 74, 41–48 (2012). (PMID: 22500628346055110.1016/j.neuron.2012.03.010)
Bedrosian, T. A. et al. Detection of brain somatic variation in epilepsy-associated developmental lesions. Epilepsia 63, 1981–1997 (2022). (PMID: 3568704710.1111/epi.17323)
Lai, D. et al. Somatic variants in diverse genes leads to a spectrum of focal cortical malformations. Brain 145, 2704–2720 (2022). (PMID: 35441233961279310.1093/brain/awac117)
Fischer, G. M. et al. Filamin A-negative hyaline astrocytic inclusions in pediatric patients with intractable epilepsy: report of 2 cases. J. Neurosurg. Pediatr. 26, 38–44 (2020). (PMID: 3221780210.3171/2020.1.PEDS19706)
Hedley-Whyte, E. T. et al. Hyaline protoplasmic astrocytopathy of neocortex. J. Neuropathol. Exp. Neurol. 68, 136–147 (2009). (PMID: 1915162810.1097/NEN.0b013e318195203)
Cai, X. et al. Single-cell, genome-wide sequencing identifies clonal somatic copy-number variation in the human brain. Cell Rep. 10, 645 (2015). (PMID: 2583210910.1016/j.celrep.2015.01.028)
Lopez-Rivera, J. A. et al. The genomic landscape across 474 surgically accessible epileptogenic human brain lesions. Brain 146, 1342–1356 (2023). (PMID: 3622638610.1093/brain/awac376)
Conlin, L. K. et al. Mechanisms of mosaicism, chimerism and uniparental disomy identified by single nucleotide polymorphism array analysis. Hum. Mol. Genet. 19, 1263–1275 (2010). (PMID: 20053666314601110.1093/hmg/ddq003)
Robberecht, C. et al. Meiotic errors followed by two parallel postzygotic trisomy rescue events are a frequent cause of constitutional segmental mosaicism. Mol. Cytogenet. 5, 19 (2012). (PMID: 22490612335045710.1186/1755-8166-5-19)
Patel, A. P. et al. Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma. Science 344, 1396–1401 (2014). (PMID: 24925914412363710.1126/science.1254257)
Pai, B. et al. High-resolution transcriptomics informs glial pathology in human temporal lobe epilepsy. Acta Neuropathol. Commun. 10, 149 (2022). (PMID: 36274170959012510.1186/s40478-022-01453-1)
Satz, J. S. et al. Distinct functions of glial and neuronal dystroglycan in the developing and adult mouse brain. J. Neurosci. 30, 14560–14572 (2010). (PMID: 20980614297931410.1523/JNEUROSCI.3247-10.2010)
Verhoog, Q. P., Holtman, L., Aronica, E. & van Vliet, E. A. Astrocytes as guardians of neuronal excitability: mechanisms underlying epileptogenesis. Front. Neurol. 11, 591690 (2020). (PMID: 33324329772632310.3389/fneur.2020.591690)
Saint-Martin, M. & Goda, Y. Astrocyte-synapse interactions and cell adhesion molecules. FEBS J. 290, 3512–3526 (2023). (PMID: 3564770910.1111/febs.16540)
Miller, M. B. et al. Somatic genomic changes in single Alzheimer’s disease neurons. Nature 604, 714–722 (2022). (PMID: 35444284935746510.1038/s41586-022-04640-1)
Chen, C. P. et al. Mosaic tetrasomy 12p with discrepancy between fetal tissues and extraembryonic tissues: molecular analysis and possible mechanism of formation. Taiwan J. Obstet. Gynecol. 49, 235–238 (2010). (PMID: 2070854010.1016/S1028-4559(10)60053-8)
Coorens, T. H. H. et al. Inherent mosaicism and extensive mutation of human placentas. Nature 592, 80–85 (2021). (PMID: 33692543761164410.1038/s41586-021-03345-1)
Eggermann, T. et al. Mosaic trisomy 1q due to a de novo translocation in a foetus with early developmental abnormalities (karyotype 46,XY, der(14),t(1;14)(p11;p11.2)/46,XY) delineation of parent and cell stage of origin. Int. J. Hum. Genet. 8, 317–323 (2008). (PMID: 10.1080/09723757.2008.11886046)
Scheres, J. M. et al. Isochromosome 1q as the sole chromosomal abnormality in two fetal teratomas. Possible trisomic or tetrasomic zygote rescue in fetal teratoma with an additional isochromosome 1q. Cancer Genet. Cytogenet. 115, 1–10 (1999). (PMID: 1056529210.1016/S0165-4608(99)00049-7)
Warburton, D. et al. Trisomy recurrence: a reconsideration based on North American data. Am. J. Hum. Genet. 75, 376–385 (2004). (PMID: 15248154118201710.1086/423331)
Struski, S., Doco-Fenzy, M. & Cornillet-Lefebvre, P. Compilation of published comparative genomic hybridization studies. Cancer Genet. Cytogenet. 135, 63–90 (2002). (PMID: 1207220510.1016/S0165-4608(01)00624-0)
Vladoiu, M. C. et al. Childhood cerebellar tumours mirror conserved fetal transcriptional programs. Nature 572, 67–73 (2019). (PMID: 31043743667562810.1038/s41586-019-1158-7)
Ward, S. et al. Gain of 1q and loss of 22 are the most common changes detected by comparative genomic hybridisation in paediatric ependymoma. Genes Chromosomes Cancer 32, 59–66 (2001). (PMID: 1147766210.1002/gcc.1167)
Carter, M. et al. Genetic abnormalities detected in ependymomas by comparative genomic hybridisation. Br. J. Cancer 86, 929–939 (2002). (PMID: 11953826236414310.1038/sj.bjc.6600180)
Pajtler, K. W. et al. Molecular classification of ependymal tumors across all CNS compartments, histopathological grades, and age groups. Cancer Cell 27, 728–743 (2015). (PMID: 25965575471263910.1016/j.ccell.2015.04.002)
Varela, C. et al. Recurrent genomic instability of chromosome 1q in neural derivatives of human embryonic stem cells. J. Clin. Invest. 122, 569–574 (2012). (PMID: 22269325326677510.1172/JCI46268)
Mehrjardi, N. Z. et al. Acquisition of chromosome 1q duplication in parental and genome-edited human-induced pluripotent stem cell-derived neural stem cells results in their higher proliferation rate in vitro and in vivo. Cell Prolif. 53, e12892 (2020). (PMID: 32918782757486610.1111/cpr.12892)
Minagawa, M., Shioda, K., Shimizu, Y. & Isshiki, T. Inclusion bodies in cerebral cortical astrocytes: a new change of astrocytes. Acta Neuropathol. 84, 113–116 (1992). (PMID: 138020010.1007/BF00427225)
Van den Veyver, I. B. et al. Presence of filamin in the astrocytic inclusions of Aicardi syndrome. Pediatr. Neurol. 30, 7–15 (2004). (PMID: 1473894310.1016/S0887-8994(03)00311-4)
Barba, C. et al. Clinical features, neuropathology, and surgical outcome in patients with refractory epilepsy and brain somatic variants in the SLC35A2 gene. Neurology 100, e528–e542 (2023). (PMID: 36307217993108510.1212/WNL.0000000000201471)
Kelly, B. J. et al. Churchill: an ultra-fast, deterministic, highly scalable and balanced parallelization strategy for the discovery of human genetic variation in clinical and population-scale genomics. Genome Biol. 16, 6 (2015). (PMID: 25600152433326710.1186/s13059-014-0577-x)
Koboldt, D. C. et al. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res. 22, 568–576 (2012). (PMID: 22300766329079210.1101/gr.129684.111)
Koboldt, D. C. et al. PTEN somatic mutations contribute to spectrum of cerebral overgrowth. Brain 144, 2971–2978 (2021). (PMID: 34048549863406410.1093/brain/awab173)
McKenna, A. et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297–1303 (2010). (PMID: 20644199292850810.1101/gr.107524.110)
Miller, K. E. et al. Somatic SLC35A2 mosaicism correlates with clinical findings in epilepsy brain tissue. Neurol. Genet. 6, e460 (2020). (PMID: 32637635732348210.1212/NXG.0000000000000460)
Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078–2079 (2009). (PMID: 19505943272300210.1093/bioinformatics/btp352)
Hao, Y. et al. Integrated analysis of multimodal single-cell data. Cell 184, 3573–87.e29 (2021). (PMID: 34062119823849910.1016/j.cell.2021.04.048)
McGinnis, C. S., Murrow, L. M. & Gartner, Z. J. DoubletFinder: doublet detection in single-cell RNA sequencing data using artificial nearest neighbors. Cell Syst. 8, 329–37.e4 (2019). (PMID: 30954475685361210.1016/j.cels.2019.03.003)
InferCNV. GitHub https://github.com/broadinstitute/inferCNV (2020).
Finak, G. et al. MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data. Genome Biol. 16, 278 (2015). (PMID: 26653891467616210.1186/s13059-015-0844-5)
Wu, T. et al. clusterProfiler 4.0: a universal enrichment tool for interpreting omics data. Innovation 2, 100141 (2021). (PMID: 345577788454663)
معلومات مُعتمدة: P50 HD105351 United States HD NICHD NIH HHS; R01 NS094596 United States NS NINDS NIH HHS; R01 NS129784 United States NS NINDS NIH HHS; T32 GM139784 United States GM NIGMS NIH HHS
تواريخ الأحداث: Date Created: 20231023 Date Completed: 20231110 Latest Revision: 20240502
رمز التحديث: 20240502
مُعرف محوري في PubMed: PMC10714261
DOI: 10.1038/s41588-023-01547-z
PMID: 37872450
قاعدة البيانات: MEDLINE
الوصف
تدمد:1546-1718
DOI:10.1038/s41588-023-01547-z