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Genome-Wide Identification and Expression Analysis of BnPP2C Gene Family in Response to Multiple Stresses in Ramie ( Boehmeria nivea L.).

التفاصيل البيبلوغرافية
العنوان: Genome-Wide Identification and Expression Analysis of BnPP2C Gene Family in Response to Multiple Stresses in Ramie ( Boehmeria nivea L.).
المؤلفون: Chen Y; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China.; College of Agriculture, Guangxi University, Nanning 530004, China., Zhao H; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China., Wang Y; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China., Qiu X; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China., Gao G; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China., Zhu A; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China., Chen P; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China., Wang X; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China., Chen K; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China., Chen J; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China., Chen P; College of Agriculture, Guangxi University, Nanning 530004, China., Chen J; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China.; National Breeding Center or Bast Fiber Crops, MARA, Changsha 410221, China.
المصدر: International journal of molecular sciences [Int J Mol Sci] 2023 Oct 18; Vol. 24 (20). Date of Electronic Publication: 2023 Oct 18.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Basel, Switzerland : MDPI, [2000-
مواضيع طبية MeSH: Boehmeria*/genetics , Boehmeria*/metabolism, Transcriptome ; Plant Leaves/metabolism ; Promoter Regions, Genetic ; Gene Expression Regulation, Plant ; Plant Proteins/genetics ; Plant Proteins/metabolism
مستخلص: The protein phosphatase 2C ( PP2C ), a key regulator of the ABA signaling pathway, plays important roles in plant growth and development, hormone signaling, and abiotic stress response. Although the PP2C gene family has been identified in many species, systematic analysis was still relatively lacking in ramie ( Boehmeria nivea L.). In the present study, we identified 63 BnPP2C genes from the ramie genome, using bioinformatics analysis, and classified them into 12 subfamilies, and this classification was consistently supported by their gene structures and conserved motifs. In addition, we observed that the functional differentiation of the BnPP2C family of genes was restricted and that fragment replication played a major role in the amplification of the BnPP2C gene family. The promoter cis -regulatory elements of BnPP2C genes were mainly involved in light response regulation, phytohormone synthesis, transport and signaling, environmental stress response and plant growth and development regulation. We identified BnPP2C genes with tissue specificity, using ramie transcriptome data from different tissues, in rhizome leaves and bast fibers. The qRT-PCR results showed that the BnPP2C1 , BnPP2C26 and BnPP2C27 genes had a strong response to drought, high salt and ABA, and there were a large number of stress-responsive elements in the promoter region of BnPP2C1 and BnPP2C26 . The results suggested that BnPP2C1 and BnPP2C26 could be used as the candidate genes for drought and salt tolerance in ramie. These results provide a reference for further studies on the function of the PP2C gene and advance the development of the mechanism of ramie stress response, with a view to providing candidate genes for the molecular breeding of ramie for drought and salt tolerance.
References: Plant J. 2008 Mar;53(5):750-62. (PMID: 18036199)
Nucleic Acids Res. 2021 Jan 8;49(D1):D458-D460. (PMID: 33104802)
Bioinformatics. 2015 Apr 15;31(8):1296-7. (PMID: 25504850)
Plant Physiol Biochem. 2017 Dec;121:187-195. (PMID: 29127881)
Nat Rev Genet. 2002 Nov;3(11):827-37. (PMID: 12415313)
Sci Rep. 2018 Nov 2;8(1):16265. (PMID: 30389998)
Mol Biol Evol. 2021 Jun 25;38(7):3022-3027. (PMID: 33892491)
Nucleic Acids Res. 2012 Jul;40(Web Server issue):W597-603. (PMID: 22661580)
Pharmacol Ther. 2020 Nov;215:107622. (PMID: 32650009)
Environ Monit Assess. 2023 Jul 31;195(8):1009. (PMID: 37522949)
Sci Rep. 2018 Aug 27;8(1):12841. (PMID: 30150630)
Int J Mol Sci. 2023 Feb 17;24(4):. (PMID: 36835472)
Plant Mol Biol. 2021 Dec;107(6):499-517. (PMID: 34596817)
BMC Genomics. 2022 Sep 8;23(1):640. (PMID: 36076184)
Genomics Proteomics Bioinformatics. 2010 Mar;8(1):77-80. (PMID: 20451164)
Plants (Basel). 2023 Jun 22;12(13):. (PMID: 37446979)
J Mol Evol. 2009 Apr;68(4):414-23. (PMID: 19308632)
New Phytol. 2023 Mar;237(5):1728-1744. (PMID: 36444538)
Science. 2000 Nov 10;290(5494):1151-5. (PMID: 11073452)
Nat Rev Genet. 2003 Nov;4(11):865-75. (PMID: 14634634)
Plant Signal Behav. 2023 Dec 31;18(1):2246228. (PMID: 37585594)
Protoplasma. 2018 Mar;255(2):643-654. (PMID: 29052008)
BMC Genomics. 2022 Aug 6;23(1):563. (PMID: 35933381)
Front Genet. 2019 Jun 12;10:561. (PMID: 31249596)
Int J Mol Sci. 2022 Dec 01;23(23):. (PMID: 36499437)
Genes (Basel). 2022 Mar 28;13(4):. (PMID: 35456410)
Int J Mol Sci. 2015 Jul 06;16(7):15251-70. (PMID: 26154766)
Mol Plant. 2020 Aug 3;13(8):1194-1202. (PMID: 32585190)
Plant Physiol Biochem. 2014 Mar;76:86-93. (PMID: 24486583)
Plant Physiol Biochem. 2023 Sep;202:107921. (PMID: 37544121)
Biotechnol Lett. 2021 May;43(5):1089-1102. (PMID: 33751277)
Int J Mol Sci. 2022 Dec 17;23(24):. (PMID: 36555743)
Biomed Res Int. 2019 Apr 3;2019:2965035. (PMID: 31073524)
Sci Rep. 2016 Jun 29;6:29022. (PMID: 27354165)
Nucleic Acids Res. 2021 Jul 2;49(W1):W293-W296. (PMID: 33885785)
BMC Plant Biol. 2004 Jun 01;4:10. (PMID: 15171794)
Front Plant Sci. 2021 Mar 31;12:644904. (PMID: 33868344)
Front Plant Sci. 2023 Jan 27;14:1093913. (PMID: 36778706)
Sci Rep. 2021 Nov 11;11(1):22045. (PMID: 34764306)
Int J Mol Sci. 2015 Feb 04;16(2):3493-511. (PMID: 25658800)
J Biol Chem. 2003 May 23;278(21):18945-52. (PMID: 12646559)
Plant Physiol Biochem. 2023 Oct;203:108053. (PMID: 37769452)
J Integr Plant Biol. 2021 Mar;63(3):528-542. (PMID: 32877013)
J Integr Plant Biol. 2022 Feb;64(2):301-341. (PMID: 34984829)
Front Plant Sci. 2022 Jun 30;13:911610. (PMID: 35845651)
Cell. 2009 Oct 30;139(3):468-84. (PMID: 19879837)
Plant J. 2010 Jan;61(2):290-9. (PMID: 19874541)
Biochem Biophys Res Commun. 2012 Jun 15;422(4):710-5. (PMID: 22627139)
Nucleic Acids Res. 2021 Jan 8;49(D1):D412-D419. (PMID: 33125078)
PLoS One. 2014 Jun 09;9(6):e99368. (PMID: 24911789)
Int J Mol Sci. 2019 Mar 20;20(6):. (PMID: 30897702)
Curr Protoc. 2022 Oct;2(10):e574. (PMID: 36200836)
Plant Physiol. 2017 Oct;175(2):628-640. (PMID: 28864470)
Front Plant Sci. 2021 Jan 14;11:617635. (PMID: 33519877)
BMC Genomics. 2008 Nov 20;9:550. (PMID: 19021904)
Trends Plant Sci. 2004 May;9(5):236-43. (PMID: 15130549)
Nucleic Acids Res. 2002 Jan 1;30(1):325-7. (PMID: 11752327)
BMC Plant Biol. 2023 Mar 30;23(1):169. (PMID: 36997878)
J Fungi (Basel). 2022 Sep 10;8(9):. (PMID: 36135674)
Nucleic Acids Res. 2009 Jul;37(Web Server issue):W202-8. (PMID: 19458158)
Front Plant Sci. 2022 Apr 08;13:851531. (PMID: 35463404)
Dev Cell. 2020 Dec 7;55(5):529-543. (PMID: 33290694)
معلومات مُعتمدة: 2022RC1013 he Youth Talent Program of Hunan Province; CARS-16 the China Agriculture Research System for Bast and Leaf Fiber Crops; G2022051017L the Foreign Expert Project; ASTIP-IBFC-04 the Agriculture Science and Technology Innovation Project
فهرسة مساهمة: Keywords: abscisic acid (ABA); evolutionary analysis; expression patterns; protein phosphatase 2C (PP2C); ramie
المشرفين على المادة: 0 (Plant Proteins)
تواريخ الأحداث: Date Created: 20231028 Date Completed: 20231030 Latest Revision: 20231030
رمز التحديث: 20231030
مُعرف محوري في PubMed: PMC10607689
DOI: 10.3390/ijms242015282
PMID: 37894962
قاعدة البيانات: MEDLINE
الوصف
تدمد:1422-0067
DOI:10.3390/ijms242015282