دورية أكاديمية

Molecular Determinants of EphA2 and EphB2 Antagonism Enable the Design of Ligands with Improved Selectivity.

التفاصيل البيبلوغرافية
العنوان: Molecular Determinants of EphA2 and EphB2 Antagonism Enable the Design of Ligands with Improved Selectivity.
المؤلفون: Guidetti L; Dipartimento di Scienze degli Alimenti e del Farmaco, Università degli Studi di Parma, Parco Area delle Scienze 27/A, I- 43124 Parma, Italy., Zappia A; Dipartimento di Scienze degli Alimenti e del Farmaco, Università degli Studi di Parma, Parco Area delle Scienze 27/A, I- 43124 Parma, Italy., Scalvini L; Dipartimento di Scienze degli Alimenti e del Farmaco, Università degli Studi di Parma, Parco Area delle Scienze 27/A, I- 43124 Parma, Italy., Ferrari FR; Dipartimento di Scienze degli Alimenti e del Farmaco, Università degli Studi di Parma, Parco Area delle Scienze 27/A, I- 43124 Parma, Italy., Giorgio C; Dipartimento di Scienze degli Alimenti e del Farmaco, Università degli Studi di Parma, Parco Area delle Scienze 27/A, I- 43124 Parma, Italy., Castelli R; Dipartimento di Scienze degli Alimenti e del Farmaco, Università degli Studi di Parma, Parco Area delle Scienze 27/A, I- 43124 Parma, Italy., Galvani F; Dipartimento di Scienze degli Alimenti e del Farmaco, Università degli Studi di Parma, Parco Area delle Scienze 27/A, I- 43124 Parma, Italy., Vacondio F; Dipartimento di Scienze degli Alimenti e del Farmaco, Università degli Studi di Parma, Parco Area delle Scienze 27/A, I- 43124 Parma, Italy., Rivara S; Dipartimento di Scienze degli Alimenti e del Farmaco, Università degli Studi di Parma, Parco Area delle Scienze 27/A, I- 43124 Parma, Italy., Mor M; Dipartimento di Scienze degli Alimenti e del Farmaco, Università degli Studi di Parma, Parco Area delle Scienze 27/A, I- 43124 Parma, Italy.; Microbiome Research Hub, Università degli Studi di Parma, Parco Area delle scienze 11/A, I- 43124 Parma, Italy., Urbinati C; Dipartimento di Medicina Molecolare Traslazionale, Università degli Studi di Brescia, Brescia 25121, Italy., Rusnati M; Dipartimento di Medicina Molecolare Traslazionale, Università degli Studi di Brescia, Brescia 25121, Italy., Tognolini M; Dipartimento di Scienze degli Alimenti e del Farmaco, Università degli Studi di Parma, Parco Area delle Scienze 27/A, I- 43124 Parma, Italy., Lodola A; Dipartimento di Scienze degli Alimenti e del Farmaco, Università degli Studi di Parma, Parco Area delle Scienze 27/A, I- 43124 Parma, Italy.
المصدر: Journal of chemical information and modeling [J Chem Inf Model] 2023 Nov 13; Vol. 63 (21), pp. 6900-6911. Date of Electronic Publication: 2023 Nov 01.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101230060 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-960X (Electronic) Linking ISSN: 15499596 NLM ISO Abbreviation: J Chem Inf Model Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Washington, D.C. : American Chemical Society, c2005-
مواضيع طبية MeSH: Receptor, EphA2*/antagonists & inhibitors , Receptor, EphB2*/antagonists & inhibitors, Humans ; Ligands ; Molecular Dynamics Simulation ; Protein Binding
مستخلص: With the aim of identifying novel antagonists selective for the EphA receptor family, a combined experimental and computational approach was taken to investigate the molecular basis of the recognition between a prototypical Eph-ephrin antagonist (UniPR1447) and two representative receptors of the EphA and EphB subfamilies, namely, EphA2 and EphB2 receptors. The conformational free-energy surface (FES) of the binding state of UniPR1447 within the ligand binding domain of EphA2 and EphB2, reconstructed from molecular dynamics (MD) simulations performed on the microsecond time scale, was exploited to drive the design and synthesis of a novel antagonist selective for EphA2 over the EphB2 receptor. The availability of compounds with this pharmacological profile will help discriminate the importance of these two receptors in the insurgence and progression of cancer.
References: Front Cell Dev Biol. 2022 Feb 10;10:788587. (PMID: 35223830)
J Chem Inf Model. 2023 May 8;63(9):2842-2856. (PMID: 37053454)
Eur J Med Chem. 2015 Feb 16;91:4-14. (PMID: 25108504)
Curr Drug Targets. 2015;16(10):1031-47. (PMID: 26212263)
Pharmaceuticals (Basel). 2022 Jan 24;15(2):. (PMID: 35215250)
Cancer Sci. 2019 Mar;110(3):841-848. (PMID: 30657619)
J Chem Theory Comput. 2021 Jul 13;17(7):4291-4300. (PMID: 34096718)
J Med Chem. 2016 May 12;59(9):4035-61. (PMID: 26807648)
Nature. 2001 Dec 20-27;414(6866):933-8. (PMID: 11780069)
J Chem Theory Comput. 2020 Mar 10;16(3):1854-1865. (PMID: 32058713)
Br J Cancer. 2014 Sep 23;111(7):1255-61. (PMID: 25144626)
Drug Discov Today. 2015 Jun;20(6):686-702. (PMID: 25615716)
Semin Cell Dev Biol. 2012 Feb;23(1):35-42. (PMID: 22044883)
EMBO Rep. 2009 Jul;10(7):722-8. (PMID: 19525919)
IUBMB Life. 2004 May;56(5):257-65. (PMID: 15370889)
J Chem Inf Model. 2009 Feb;49(2):377-89. (PMID: 19434839)
J Am Chem Soc. 2011 Jun 22;133(24):9181-3. (PMID: 21545110)
Nat Rev Drug Discov. 2014 Jan;13(1):39-62. (PMID: 24378802)
Comput Struct Biotechnol J. 2014 Dec 10;13:111-21. (PMID: 25709761)
J Med Chem. 2004 Mar 25;47(7):1739-49. (PMID: 15027865)
Molecules. 2020 Sep 04;25(18):. (PMID: 32899888)
Eur J Pharmacol. 2022 Feb 15;917:174588. (PMID: 34688637)
Chem Biol Drug Des. 2007 Feb;69(2):146-8. (PMID: 17381729)
Invest New Drugs. 2022 Aug;40(4):747-755. (PMID: 35404015)
J Med Chem. 2022 Nov 24;65(22):15443-15456. (PMID: 36331527)
Cancer Cell. 2012 Dec 11;22(6):765-80. (PMID: 23238013)
Chemistry. 2016 Jun 6;22(24):8048-52. (PMID: 27139720)
J Med Chem. 2017 May 25;60(10):4304-4315. (PMID: 28489362)
J Med Chem. 2015 Sep 24;58(18):7512-25. (PMID: 26334942)
Chem Sci. 2018 Feb 12;9(10):2740-2749. (PMID: 29732058)
Nat Rev Cancer. 2010 Mar;10(3):165-80. (PMID: 20179713)
Annu Rev Pharmacol Toxicol. 2015;55:465-87. (PMID: 25292427)
Cancers (Basel). 2019 Mar 13;11(3):. (PMID: 30871240)
Eur J Med Chem. 2015 Oct 20;103:312-24. (PMID: 26363867)
Curr Opin Cell Biol. 2007 Oct;19(5):534-42. (PMID: 17928214)
Curr Drug Targets. 2015;16(10):1021-30. (PMID: 26028047)
Oncogene. 2000 Dec 7;19(52):6043-52. (PMID: 11146556)
J Med Chem. 2017 Jan 26;60(2):787-796. (PMID: 28005388)
Proc Natl Acad Sci U S A. 2011 Jun 21;108(25):10184-9. (PMID: 21646537)
Mol Cancer Ther. 2020 Jul;19(7):1385-1394. (PMID: 32398269)
Oncotarget. 2018 May 11;9(36):24347-24363. (PMID: 29849945)
Oncotarget. 2016 Sep 13;7(37):59860-59876. (PMID: 27494882)
Expert Opin Ther Targets. 2020 May;24(5):403-415. (PMID: 32197575)
Mol Cancer Res. 2008 Dec;6(12):1795-806. (PMID: 19074825)
Int J Mol Sci. 2010 Aug 18;11(8):3016-34. (PMID: 21152288)
J Chem Inf Model. 2014 Oct 27;54(10):2621-6. (PMID: 25289483)
Eur J Med Chem. 2011 Sep;46(9):4466-73. (PMID: 21820769)
Expert Opin Ther Targets. 2011 Jan;15(1):31-51. (PMID: 21142802)
Expert Opin Investig Drugs. 2020 Jun;29(6):567-582. (PMID: 32348169)
J Med Chem. 2004 Mar 25;47(7):1750-9. (PMID: 15027866)
Cell. 2008 Apr 4;133(1):38-52. (PMID: 18394988)
J Comput Aided Mol Des. 2019 Jan;33(1):1-18. (PMID: 30632055)
المشرفين على المادة: 0 (Ligands)
EC 2.7.10.1 (Receptor, EphA2)
EC 2.7.10.1 (Receptor, EphB2)
تواريخ الأحداث: Date Created: 20231101 Date Completed: 20231128 Latest Revision: 20231128
رمز التحديث: 20240628
مُعرف محوري في PubMed: PMC10647059
DOI: 10.1021/acs.jcim.3c01064
PMID: 37910792
قاعدة البيانات: MEDLINE
الوصف
تدمد:1549-960X
DOI:10.1021/acs.jcim.3c01064