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Community recommendations on cryoEM data archiving and validation: Outcomes of a wwPDB/EMDB workshop on cryoEM data management, deposition and validation.

التفاصيل البيبلوغرافية
العنوان: Community recommendations on cryoEM data archiving and validation: Outcomes of a wwPDB/EMDB workshop on cryoEM data management, deposition and validation.
المؤلفون: Kleywegt GJ; EMBL-EBI, Cambridge, UK., Adams PD; Lawrence Berkeley Laboratory, Berkeley, CA, USA and University of California, Berkeley, CA, USA., Butcher SJ; University of Helsinki, Helsinki, Finland., Lawson CL; RCSB Protein Data Bank, Rutgers, The State University of New Jersey, USA., Rohou A; Genentech, South San Francisco, California, USA., Rosenthal PB; The Francis Crick Institute, London, UK., Subramaniam S; University of British Columbia, Vancouver, BC, Canada., Topf M; Birkbeck, University of London, London, UK., Abbott S; EMBL-EBI, Cambridge, UK., Baldwin PR; The Salk Institute for Biological Studies, La Jolla, CA, USA., Berrisford JM; EMBL-EBI, Cambridge, UK., Bricogne G; Global Phasing Limited, Cambridge, UK., Choudhary P; EMBL-EBI, Cambridge, UK., Croll TI; University of Cambridge, Cambridge, UK., Danev R; The University of Tokyo, Tokyo, Japan., Ganesan SJ; University of California at San Francisco, San Francisco, CA, USA., Grant T; Morgridge Institute for Research, Madison, WI, USA., Gutmanas A; EMBL-EBI, Cambridge, UK., Henderson R; MRC Laboratory of Molecular Biology, Cambridge, UK., Heymann JB; National Institutes of Health, Bethesda, MD, USA., Huiskonen JT; University of Helsinki, Helsinki, Finland., Istrate A; EMBL-EBI, Cambridge, UK., Kato T; Osaka University, Suita, Osaka, Japan., Lander GC; Scripps Research, La Jolla, CA, USA., Lok SM; Duke-NUS Medical School, Singapore., Ludtke SJ; Baylor College of Medicine, Houston, TX, USA., Murshudov GN; MRC Laboratory of Molecular Biology, Cambridge, UK., Pye R; EMBL-EBI, Cambridge, UK., Pintilie GD; Stanford University, Stanford, CA, USA., Richardson JS; Duke University, Durham, NC, USA., Sachse C; Forschungszentrum Jülich, Germany., Salih O; EMBL-EBI, Cambridge, UK., Scheres SHW; MRC Laboratory of Molecular Biology, Cambridge, UK., Schroeder GF; Forschungszentrum Jülich, Germany., Sorzano COS; National Center of Biotechnology (CSIC), Madrid, Spain., Stagg SM; Florida State University, Tallahassee, FL, USA., Wang Z; EMBL-EBI, Cambridge, UK., Warshamanage R; MRC Laboratory of Molecular Biology, Cambridge, UK., Westbrook JD; RCSB Protein Data Bank, Rutgers, The State University of New Jersey, USA., Winn MD; Science and Technology Facilities Council, Research Complex at Harwell, Oxon, UK., Young JY; RCSB Protein Data Bank, Rutgers, The State University of New Jersey, USA., Burley SK; RCSB Protein Data Bank, Rutgers, The State University of New Jersey, USA., Hoch JC; UConn Health, USA., Kurisu G; Osaka University, Suita, Osaka, Japan., Morris K; EMBL-EBI, Cambridge, UK., Patwardhan A; EMBL-EBI, Cambridge, UK., Velankar S; EMBL-EBI, Cambridge, UK.
المصدر: ArXiv [ArXiv] 2024 Feb 02. Date of Electronic Publication: 2024 Feb 02.
نوع المنشور: Preprint
اللغة: English
بيانات الدورية: Country of Publication: United States NLM ID: 101759493 Publication Model: Electronic Cited Medium: Internet ISSN: 2331-8422 (Electronic) Linking ISSN: 23318422 NLM ISO Abbreviation: ArXiv Subsets: PubMed not MEDLINE
مستخلص: In January 2020, a workshop was held at EMBL-EBI (Hinxton, UK) to discuss data requirements for deposition and validation of cryoEM structures, with a focus on single-particle analysis. The meeting was attended by 47 experts in data processing, model building and refinement, validation, and archiving of such structures. This report describes the workshop's motivation and history, the topics discussed, and consensus recommendations resulting from the workshop. Some challenges for future methods-development efforts in this area are also highlighted, as is the implementation to date of some of the recommendations.
التعليقات: Update in: IUCrJ. 2024 Mar 1;:. (PMID: 38358351)
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معلومات مُعتمدة: United Kingdom WT_ Wellcome Trust; R01 GM079429 United States GM NIGMS NIH HHS; R01 GM133198 United States GM NIGMS NIH HHS; R24 GM150793 United States GM NIGMS NIH HHS
فهرسة مساهمة: Keywords: Cryogenic-specimen Electron Microscopy; Electron Microscopy Data Bank; Protein Data Bank; data archiving; quality control; validation
تواريخ الأحداث: Date Created: 20231211 Latest Revision: 20240306
رمز التحديث: 20240306
مُعرف محوري في PubMed: PMC10705588
PMID: 38076521
قاعدة البيانات: MEDLINE
الوصف
تدمد:2331-8422