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Associated bacterial communities, confrontation studies, and comparative genomics reveal important interactions between Morchella with Pseudomonas spp.

التفاصيل البيبلوغرافية
العنوان: Associated bacterial communities, confrontation studies, and comparative genomics reveal important interactions between Morchella with Pseudomonas spp.
المؤلفون: Cailleau G; Laboratory of Microbiology, University of Neuchâtel, Neuchâtel, Switzerland., Hanson BT; Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, United States., Cravero M; Laboratory of Microbiology, University of Neuchâtel, Neuchâtel, Switzerland., Zhioua S; Laboratory of Microbiology, University of Neuchâtel, Neuchâtel, Switzerland., Hilpish P; Laboratory of Microbiology, University of Neuchâtel, Neuchâtel, Switzerland., Ruiz C; Laboratory of Microbiology, University of Neuchâtel, Neuchâtel, Switzerland., Robinson AJ; Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, United States., Kelliher JM; Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, United States., Morales D; Center for Integrated Nanotechnologies, Los Alamos National Laboratory, Los Alamos, NM, United States., Gallegos-Graves V; Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, United States., Bonito G; Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, United States., Chain PSG; Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, United States., Bindschedler S; Laboratory of Microbiology, University of Neuchâtel, Neuchâtel, Switzerland., Junier P; Laboratory of Microbiology, University of Neuchâtel, Neuchâtel, Switzerland.
المصدر: Frontiers in fungal biology [Front Fungal Biol] 2023 Dec 13; Vol. 4, pp. 1285531. Date of Electronic Publication: 2023 Dec 13 (Print Publication: 2023).
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Frontiers Media S.A Country of Publication: Switzerland NLM ID: 9918266300506676 Publication Model: eCollection Cited Medium: Internet ISSN: 2673-6128 (Electronic) Linking ISSN: 26736128 NLM ISO Abbreviation: Front Fungal Biol Subsets: PubMed not MEDLINE
أسماء مطبوعة: Original Publication: Lausanne : Frontiers Media S.A., [2020]-
مستخلص: Members of the fungal genus Morchella are widely known for their important ecological roles and significant economic value. In this study, we used amplicon and genome sequencing to characterize bacterial communities associated with sexual fruiting bodies from wild specimens, as well as vegetative mycelium and sclerotia obtained from Morchella isolates grown in vitro . These investigations included diverse representatives from both Elata and Esculenta Morchella clades. Unique bacterial community compositions were observed across the various structures examined, both within and across individual Morchella isolates or specimens. However, specific bacterial taxa were frequently detected in association with certain structures, providing support for an associated core bacterial community. Bacteria from the genus Pseudomonas and Ralstonia constituted the core bacterial associates of Morchella mycelia and sclerotia, while other genera (e.g., Pedobacter spp., Deviosa spp., and Bradyrhizobium spp.) constituted the core bacterial community of fruiting bodies. Furthermore, the importance of Pseudomonas as a key member of the bacteriome was supported by the isolation of several Pseudomonas strains from mycelia during in vitro cultivation. Four of the six mycelial-derived Pseudomonas isolates shared 16S rDNA sequence identity with amplicon sequences recovered directly from the examined fungal structures. Distinct interaction phenotypes (antagonistic or neutral) were observed in confrontation assays between these bacteria and various Morchella isolates. Genome sequences obtained from these Pseudomonas isolates revealed intriguing differences in gene content and annotated functions, specifically with respect to toxin-antitoxin systems, cell adhesion, chitinases, and insecticidal toxins. These genetic differences correlated with the interaction phenotypes. This study provides evidence that Pseudomonas spp. are frequently associated with Morchella and these associations may greatly impact fungal physiology.
Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The reviewer FY declared a past co-authorship/collaboration with the author GB to the handling editor. The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision.
(Copyright © 2023 Cailleau, Hanson, Cravero, Zhioua, Hilpish, Ruiz, Robinson, Kelliher, Morales, Gallegos-Graves, Bonito, Chain, Bindschedler and Junier.)
References: PLoS One. 2019 Aug 28;14(8):e0221025. (PMID: 31461454)
Appl Microbiol Biotechnol. 2018 Feb;102(4):1639-1650. (PMID: 29362825)
Microlife. 2023 Oct 18;4:uqad042. (PMID: 37965130)
Int J Syst Evol Microbiol. 2020 Mar;70(3):1528-1540. (PMID: 31922466)
3 Biotech. 2019 Mar;9(3):81. (PMID: 30800592)
Environ Microbiol. 2014 Sep;16(9):2831-47. (PMID: 24118660)
Nat Methods. 2015 Jan;12(1):59-60. (PMID: 25402007)
Mol Biol Evol. 2021 Jun 25;38(7):3022-3027. (PMID: 33892491)
FEMS Microbiol Rev. 2023 May 19;47(3):. (PMID: 37286896)
Front Microbiol. 2023 Feb 16;14:1074468. (PMID: 36876069)
Nat Biotechnol. 2019 Aug;37(8):852-857. (PMID: 31341288)
Arch Microbiol. 1995 Sep;164(3):165-72. (PMID: 7545384)
Front Microbiol. 2017 May 10;8:836. (PMID: 28539921)
Environ Microbiol. 2015 Aug;17(8):2647-60. (PMID: 24903279)
BMC Genomics. 2015 Aug 16;16:609. (PMID: 26275815)
J Bacteriol. 2020 Mar 11;202(7):. (PMID: 31932311)
Proc Biol Sci. 2013 Oct 30;280(1773):20132242. (PMID: 24174111)
Methods Mol Biol. 2012;804:281-95. (PMID: 22144159)
Appl Microbiol Biotechnol. 2022 Jun;106(12):4401-4412. (PMID: 35731306)
J Fungi (Basel). 2023 Aug 16;9(8):. (PMID: 37623626)
Nucleic Acids Res. 2002 Jan 1;30(1):276-80. (PMID: 11752314)
Nat Methods. 2016 Jul;13(7):581-3. (PMID: 27214047)
Crit Rev Biotechnol. 2018 Mar;38(2):259-271. (PMID: 28585444)
Microb Genom. 2023 Aug;9(8):. (PMID: 37578822)
Nucleic Acids Res. 2014 Jan;42(Database issue):D199-205. (PMID: 24214961)
PLoS One. 2013 Apr 22;8(4):e61217. (PMID: 23630581)
ISME J. 2011 Oct;5(10):1571-9. (PMID: 21472016)
Appl Environ Microbiol. 2020 Sep 1;86(18):. (PMID: 32651207)
PLoS One. 2016 Aug 31;11(8):e0161120. (PMID: 27580176)
J Bacteriol. 1991 Jan;173(2):697-703. (PMID: 1987160)
Sci Rep. 2023 Feb 7;13(1):2213. (PMID: 36750680)
Bioinformatics. 2018 Jul 1;34(13):2322-2324. (PMID: 29949954)
Front Microbiol. 2023 Feb 22;14:979835. (PMID: 36910237)
BMC Genomics. 2014 Jan 03;15:8. (PMID: 24387194)
Curr Genet. 2009 Jun;55(3):233-43. (PMID: 19337734)
Bioinformatics. 2006 Nov 1;22(21):2695-6. (PMID: 16940322)
Environ Microbiol. 2021 Nov;23(11):6651-6662. (PMID: 34327796)
Mol Ecol. 1993 Apr;2(2):113-8. (PMID: 8180733)
PLoS Pathog. 2014 Aug 21;10(8):e1004288. (PMID: 25144637)
Nucleic Acids Res. 2013 Jan;41(Database issue):D590-6. (PMID: 23193283)
Commun Biol. 2021 Oct 7;4(1):1168. (PMID: 34621007)
Nucleic Acids Res. 2017 Jan 4;45(D1):D353-D361. (PMID: 27899662)
Int Microbiol. 2022 Nov;25(4):679-689. (PMID: 35670867)
Nat Microbiol. 2021 Jan;6(1):3-6. (PMID: 33349678)
Front Microbiol. 2023 Feb 01;14:1079353. (PMID: 36819010)
Science. 1998 Jun 26;280(5372):2129-32. (PMID: 9641921)
PeerJ. 2016 Oct 18;4:e2584. (PMID: 27781170)
Microb Ecol. 2016 Jul;72(1):4-8. (PMID: 27026101)
Sci Rep. 2016 Mar 01;6:22434. (PMID: 26928176)
Cell Mol Life Sci. 2000 May;57(5):828-33. (PMID: 10892346)
PeerJ. 2019 Sep 26;7:e7744. (PMID: 31579614)
Fungal Genet Biol. 2011 Mar;48(3):252-65. (PMID: 20888422)
J Fungi (Basel). 2022 Mar 14;8(3):. (PMID: 35330300)
Infect Immun. 2005 Oct;73(10):6860-7. (PMID: 16177365)
Front Cell Infect Microbiol. 2020 Nov 11;10:550505. (PMID: 33262953)
Microorganisms. 2021 Aug 18;9(8):. (PMID: 34442845)
Front Microbiol. 2019 Mar 01;10:124. (PMID: 30881350)
Environ Microbiol. 2017 Aug;19(8):2964-2983. (PMID: 28076891)
Sci Adv. 2019 Oct 16;5(10):eaax6497. (PMID: 31663026)
Appl Environ Microbiol. 1998 Aug;64(8):3036-41. (PMID: 9687470)
Appl Environ Microbiol. 1987 May;53(5):1132-7. (PMID: 16347340)
ISME J. 2016 Oct;10(10):2527-42. (PMID: 26894448)
J Mol Biol. 1990 Oct 5;215(3):403-10. (PMID: 2231712)
ISME J. 2017 Oct;11(10):2394-2398. (PMID: 28548657)
PLoS One. 2017 Mar 28;12(3):e0174618. (PMID: 28350840)
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7. (PMID: 15034147)
فهرسة مساهمة: Keywords: bacteriome; fruiting body; morel; mycelium; sclerotia
تواريخ الأحداث: Date Created: 20231229 Latest Revision: 20231230
رمز التحديث: 20231231
مُعرف محوري في PubMed: PMC10753826
DOI: 10.3389/ffunb.2023.1285531
PMID: 38155707
قاعدة البيانات: MEDLINE
الوصف
تدمد:2673-6128
DOI:10.3389/ffunb.2023.1285531