دورية أكاديمية
أعرض في EDS

Strong selection signatures for Aleutian disease tolerance acting on novel candidate genes linked to immune and cellular responses in American mink (Neogale vison).

التفاصيل البيبلوغرافية
العنوان: Strong selection signatures for Aleutian disease tolerance acting on novel candidate genes linked to immune and cellular responses in American mink (Neogale vison).
المؤلفون: Vahedi SM; Department of Animal Science and Aquaculture, Dalhousie University, Bible Hill, NS, B2N5E3, Canada., Salek Ardestani S; Department of Animal Science, University of Zanjan, Zanjan, 4537138791, Zanjan, Iran., Banabazi MH; Department of Animal Breeding and Genetics (HGEN), Centre for Veterinary Medicine and Animal Science (VHC), Swedish University of Agricultural Sciences (SLU), 75007, Uppsala, Sweden. mohammad.hossein.banabazi@slu.se.; Department of Biotechnology, Animal Science Research Institute of IRAN (ASRI),, Agricultural Research, Education & Extension Organization (AREEO), Karaj, 3146618361, Iran. mohammad.hossein.banabazi@slu.se., Clark KF; Department of Animal Science and Aquaculture, Dalhousie University, Bible Hill, NS, B2N5E3, Canada. fraser.clark@dal.ca.
المصدر: Scientific reports [Sci Rep] 2024 Jan 10; Vol. 14 (1), pp. 1035. Date of Electronic Publication: 2024 Jan 10.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE
أسماء مطبوعة: Original Publication: London : Nature Publishing Group, copyright 2011-
مواضيع طبية MeSH: Aleutian Mink Disease*/genetics , Aleutian Mink Disease Virus*/genetics, Animals ; Humans ; Mink/genetics ; Chromosomes, Human, Pair 1 ; Chromosomes, Human, Pair 6
مستخلص: Aleutian disease (AD) is a multi-systemic infectious disease in American mink (Neogale vison) caused by Aleutian mink disease virus (AMDV). This study aimed to identify candidate regions and genes underlying selection for response against AMDV using whole-genome sequence (WGS) data. Three case-control selection signatures studies were conducted between animals (N = 85) producing high versus low antibody levels against AMDV, grouped by counter immunoelectrophoresis (CIEP) test and two enzyme-linked immunosorbent assays (ELISA). Within each study, selection signals were detected using fixation index (FST) and nucleotide diversity (θπ ratios), and validated by cross-population extended haplotype homozygosity (XP-EHH) test. Within- and between-studies overlapping results were then evaluated. Within-studies overlapping results indicated novel candidate genes related to immune and cellular responses (e.g., TAP2, RAB32), respiratory system function (e.g., SPEF2, R3HCC1L), and reproduction system function (e.g., HSF2, CFAP206) in other species. Between-studies overlapping results identified three large segments under strong selection pressure, including two on chromosome 1 (chr1:88,770-98,281 kb and chr1:114,133-120,473) and one on chromosome 6 (chr6:37,953-44,279 kb). Within regions with strong signals, we found novel candidate genes involved in immune and cellular responses (e.g., homologous MHC class II genes, ITPR3, VPS52) in other species. Our study brings new insights into candidate regions and genes controlling AD response.
(© 2024. The Author(s).)
التعليقات: Erratum in: Sci Rep. 2024 Apr 3;14(1):7842. (PMID: 38570580)
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تواريخ الأحداث: Date Created: 20240110 Date Completed: 20240112 Latest Revision: 20240405
رمز التحديث: 20240405
مُعرف محوري في PubMed: PMC10781757
DOI: 10.1038/s41598-023-51039-7
PMID: 38200094
قاعدة البيانات: MEDLINE
الوصف
تدمد:2045-2322
DOI:10.1038/s41598-023-51039-7