دورية أكاديمية
ViralWasm: a client-side user-friendly web application suite for viral genomics.
| العنوان: | ViralWasm: a client-side user-friendly web application suite for viral genomics. |
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| المؤلفون: | Ji D; Department of Computer Science & Engineering, UC San Diego, La Jolla, CA 92093, United States., Aboukhalil R; Chan Zuckerberg Initiative, Redwood City, CA 94063, United States., Moshiri N; Department of Computer Science & Engineering, UC San Diego, La Jolla, CA 92093, United States. |
| المصدر: | Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jan 02; Vol. 40 (1). |
| نوع المنشور: | Journal Article; Research Support, Non-U.S. Gov't |
| اللغة: | English |
| بيانات الدورية: | Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE |
| أسماء مطبوعة: | Original Publication: Oxford : Oxford University Press, c1998- |
| مواضيع طبية MeSH: | Software* , Genomics*/methods, Humans ; Web Browser ; Genome, Viral |
| مستخلص: | Motivation: The genomic surveillance of viral pathogens such as SARS-CoV-2 and HIV-1 has been critical to modern epidemiology and public health, but the use of sequence analysis pipelines requires computational expertise, and web-based platforms require sending potentially sensitive raw sequence data to remote servers. Results: We introduce ViralWasm, a user-friendly graphical web application suite for viral genomics. All ViralWasm tools utilize WebAssembly to execute the original command line tools client-side directly in the web browser without any user setup, with a cost of just 2-3x slowdown with respect to their command line counterparts. Availability and Implementation: The ViralWasm tool suite can be accessed at: https://niema-lab.github.io/ViralWasm. (© The Author(s) 2024. Published by Oxford University Press.) |
| معلومات مُعتمدة: | UC San Diego Faculty Research Funds |
| تواريخ الأحداث: | Date Created: 20240110 Date Completed: 20240202 Latest Revision: 20240228 |
| رمز التحديث: | 20240229 |
| مُعرف محوري في PubMed: | PMC10809900 |
| DOI: | 10.1093/bioinformatics/btae018 |
| PMID: | 38200583 |
| قاعدة البيانات: | MEDLINE |
Full Text Finder | تدمد: | 1367-4811 |
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| DOI: | 10.1093/bioinformatics/btae018 |