دورية أكاديمية

Online carbohydrate 3D structure validation with the Privateer web app.

التفاصيل البيبلوغرافية
العنوان: Online carbohydrate 3D structure validation with the Privateer web app.
المؤلفون: Dialpuri JS; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 3BG, United Kingdom., Bagdonas H; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 3BG, United Kingdom., Schofield LC; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 3BG, United Kingdom., Pham PT; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 3BG, United Kingdom., Holland L; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 3BG, United Kingdom., Bond PS; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 3BG, United Kingdom., Sánchez Rodríguez F; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 3BG, United Kingdom., McNicholas SJ; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 3BG, United Kingdom., Agirre J; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 3BG, United Kingdom.
المصدر: Acta crystallographica. Section F, Structural biology communications [Acta Crystallogr F Struct Biol Commun] 2024 Feb 01; Vol. 80 (Pt 2), pp. 30-35. Date of Electronic Publication: 2024 Jan 24.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: John Wiley & Sons Inc Country of Publication: United States NLM ID: 101620319 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2053-230X (Electronic) Linking ISSN: 2053230X NLM ISO Abbreviation: Acta Crystallogr F Struct Biol Commun Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Malden, MA : John Wiley & Sons Inc., [2014]-
مواضيع طبية MeSH: Carbohydrates*/chemistry , Mobile Applications*, Crystallography, X-Ray ; Glycosylation ; Polysaccharides/chemistry
مستخلص: Owing to the difficulties associated with working with carbohydrates, validating glycan 3D structures prior to deposition into the Protein Data Bank has become a staple of the structure-solution pipeline. The Privateer software provides integrative methods for the validation, analysis, refinement and graphical representation of 3D atomic structures of glycans, both as ligands and as protein modifiers. While Privateer is free software, it requires users to install any of the structural biology software suites that support it or to build it from source code. Here, the Privateer web app is presented, which is always up to date and available to be used online (https://privateer.york.ac.uk) without installation. This self-updating tool, which runs locally on the user's machine, will allow structural biologists to simply and quickly analyse carbohydrate ligands and protein glycosylation from a web browser whilst retaining all confidential information on their devices.
(open access.)
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معلومات مُعتمدة: BB/T0072221 United Kingdom BB_ Biotechnology and Biological Sciences Research Council; BB/S005099/1 United Kingdom BB_ Biotechnology and Biological Sciences Research Council
فهرسة مساهمة: Keywords: N-glycans; N-glycosylation; Privateer; carbohydrates; polysaccharides; validation; web apps
المشرفين على المادة: 0 (Carbohydrates)
0 (Polysaccharides)
تواريخ الأحداث: Date Created: 20240124 Date Completed: 20240205 Latest Revision: 20240205
رمز التحديث: 20240205
مُعرف محوري في PubMed: PMC10836424
DOI: 10.1107/S2053230X24000359
PMID: 38265073
قاعدة البيانات: MEDLINE
الوصف
تدمد:2053-230X
DOI:10.1107/S2053230X24000359