دورية أكاديمية
Autotrophic biofilms sustained by deeply sourced groundwater host diverse bacteria implicated in sulfur and hydrogen metabolism.
العنوان: | Autotrophic biofilms sustained by deeply sourced groundwater host diverse bacteria implicated in sulfur and hydrogen metabolism. |
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المؤلفون: | Valentin-Alvarado LE; Graduate Group in Microbiology, University of California, Berkeley, CA, USA.; Innovative Genomics Institute, University of California, Berkeley, CA, USA., Fakra SC; Advanced Light Source, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Probst AJ; Earth and Planetary Science, University of California, Berkeley, CA, USA.; Environmental Metagenomics, Research Center One Health Ruhr of the University Alliance Ruhr, Faculty of Chemistry,, University of Duisburg-Essen, Essen, Essen, Germany., Giska JR; Earth and Planetary Science, University of California, Berkeley, CA, USA.; Cleaner Air Oregon Program, Oregon Department of Environmental Quality, Portland, USA., Jaffe AL; Graduate Group in Microbiology, University of California, Berkeley, CA, USA., Oltrogge LM; Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA.; Howard Hughes Medical Institute, University of California, Berkeley, CA, 94720, USA., West-Roberts J; Environmental Science, Policy and Management, University of California, Berkeley, CA, USA., Rowland J; Earth and Planetary Science, University of California, Berkeley, CA, USA.; Earth and Env. Sciences Division, Los Alamos National Laboratory, Los Alamos, NM, USA., Manga M; Earth and Planetary Science, University of California, Berkeley, CA, USA.; University of Duisburg-Essen, Universitätsstraße 5, 45141, Essen, Germany., Savage DF; Innovative Genomics Institute, University of California, Berkeley, CA, USA.; Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA.; Howard Hughes Medical Institute, University of California, Berkeley, CA, 94720, USA., Greening C; Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, Australia., Baker BJ; Department of Integrative Biology, University of Texas, Austin, USA.; Department of Marine Science, University of Texas, Austin, USA., Banfield JF; Innovative Genomics Institute, University of California, Berkeley, CA, USA. jbanfield@berkeley.edu.; Earth and Planetary Science, University of California, Berkeley, CA, USA. jbanfield@berkeley.edu.; Environmental Science, Policy and Management, University of California, Berkeley, CA, USA. jbanfield@berkeley.edu.; Department of Marine Science, University of Texas, Austin, USA. jbanfield@berkeley.edu.; Energy Geoscience Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. jbanfield@berkeley.edu. |
المصدر: | Microbiome [Microbiome] 2024 Jan 26; Vol. 12 (1), pp. 15. Date of Electronic Publication: 2024 Jan 26. |
نوع المنشور: | Video-Audio Media; Journal Article |
اللغة: | English |
بيانات الدورية: | Publisher: BioMed Central Country of Publication: England NLM ID: 101615147 Publication Model: Electronic Cited Medium: Internet ISSN: 2049-2618 (Electronic) Linking ISSN: 20492618 NLM ISO Abbreviation: Microbiome Subsets: MEDLINE |
أسماء مطبوعة: | Original Publication: London: BioMed Central, 2013- |
مواضيع طبية MeSH: | Ecosystem* , Groundwater*/microbiology, Bacteria/genetics ; Bacteria/metabolism ; Sulfides/metabolism ; Oxidation-Reduction ; Sulfur/metabolism ; Biofilms ; Hydrogen/metabolism ; Phylogeny |
مستخلص: | Background: Biofilms in sulfide-rich springs present intricate microbial communities that play pivotal roles in biogeochemical cycling. We studied chemoautotrophically based biofilms that host diverse CPR bacteria and grow in sulfide-rich springs to investigate microbial controls on biogeochemical cycling. Results: Sulfide springs biofilms were investigated using bulk geochemical analysis, genome-resolved metagenomics, and scanning transmission X-ray microscopy (STXM) at room temperature and 87 K. Chemolithotrophic sulfur-oxidizing bacteria, including Thiothrix and Beggiatoa, dominate the biofilms, which also contain CPR Gracilibacteria, Absconditabacteria, Saccharibacteria, Peregrinibacteria, Berkelbacteria, Microgenomates, and Parcubacteria. STXM imaging revealed ultra-small cells near the surfaces of filamentous bacteria that may be CPR bacterial episymbionts. STXM and NEXAFS spectroscopy at carbon K and sulfur L Conclusions: Our combined metagenomic, geochemical, spectromicroscopic, and structural bioinformatics analyses of biofilms growing in sulfide-rich springs revealed consortia that contain CPR bacteria and sulfur-oxidizing Proteobacteria, including Thiothrix, and bacteria from a new family within Beggiatoales. We infer roles for CPR bacteria in sulfur and hydrogen cycling. Video Abstract. (© 2024. The Author(s).) |
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معلومات مُعتمدة: | 1R01GM12763 United States NH NIH HHS; 1R01GM12763 United States NH NIH HHS |
فهرسة مساهمة: | Keywords: Candidate phyla radiation; Groundwater microbiome; Synchrotron-based spectromicroscopy |
المشرفين على المادة: | 0 (Sulfides) 70FD1KFU70 (Sulfur) 7YNJ3PO35Z (Hydrogen) |
تواريخ الأحداث: | Date Created: 20240125 Date Completed: 20240129 Latest Revision: 20240129 |
رمز التحديث: | 20240129 |
مُعرف محوري في PubMed: | PMC10811913 |
DOI: | 10.1186/s40168-023-01704-w |
PMID: | 38273328 |
قاعدة البيانات: | MEDLINE |
تدمد: | 2049-2618 |
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DOI: | 10.1186/s40168-023-01704-w |