دورية أكاديمية
أعرض في EDS

Transcriptome sequencing and screening of genes related to the MADS-box gene family in Clematis courtoisii.

التفاصيل البيبلوغرافية
العنوان: Transcriptome sequencing and screening of genes related to the MADS-box gene family in Clematis courtoisii.
المؤلفون: Chen M; Department of Ornamental Plant Research Center, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China., Li L; Department of Ornamental Plant Research Center, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China., Wang S; Department of Ornamental Plant Research Center, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China., Wang P; Department of Ornamental Plant Research Center, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China., Li Y; Department of Ornamental Plant Research Center, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China.
المصدر: PloS one [PLoS One] 2024 Feb 05; Vol. 19 (2), pp. e0294426. Date of Electronic Publication: 2024 Feb 05 (Print Publication: 2024).
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE
أسماء مطبوعة: Original Publication: San Francisco, CA : Public Library of Science
مواضيع طبية MeSH: Clematis*/genetics, Transcriptome ; MADS Domain Proteins/genetics ; MADS Domain Proteins/metabolism ; Genes, Plant ; Multigene Family ; Plants/genetics ; Phylogeny ; Gene Expression Regulation, Plant ; Plant Proteins/genetics ; Plant Proteins/metabolism
مستخلص: The MADS-box gene family controls plant flowering and floral organ development; therefore, it is particularly important in ornamental plants. To investigate the genes associated with the MADS-box family in Clematis courtoisii, we performed full-length transcriptome sequencing on C. courtoisii using the PacBio Sequel third-generation sequencing platform, as no reference genome data was available. A total of 12.38 Gb of data, containing 9,476,585 subreads and 50,439 Unigenes were obtained. According to functional annotation, a total of 37,923 Unigenes (75.18% of the total) were assigned with functional annotations, and 50 Unigenes were identified as MADS-box related genes. Subsequently, we employed hmmerscan to perform protein sequence similarity search for the translated Unigene sequences and successfully identified 19 Unigenes associated with the MADS-box gene family, including MIKC*(1) and MIKCC (18) genes. Furthermore, within the MIKCC group, six subclasses can be further distinguished.
Competing Interests: The authors have declared that no competing interests exist.
(Copyright: © 2024 Chen et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
References: Yi Chuan. 2015 Mar;37(3):259-268. (PMID: 25787000)
PLoS One. 2018 Jul 19;13(7):e0200762. (PMID: 30024950)
BMC Plant Biol. 2022 Mar 23;22(1):138. (PMID: 35321648)
Nat Biotechnol. 2011 May 15;29(7):644-52. (PMID: 21572440)
Nat Biotechnol. 2014 Sep;32(9):915-925. (PMID: 25150835)
Hereditas. 2018 May 15;155:23. (PMID: 29785177)
Int J Mol Sci. 2021 Sep 28;22(19):. (PMID: 34638781)
Front Plant Sci. 2021 Oct 07;12:737004. (PMID: 34691113)
Front Plant Sci. 2018 May 09;9:631. (PMID: 29868085)
BMC Plant Biol. 2022 May 26;22(1):263. (PMID: 35614434)
BMC Genomics. 2020 Jan 2;21(1):8. (PMID: 31896347)
BMC Bioinformatics. 2019 Jan 15;20(1):28. (PMID: 30646844)
Plant Sci. 2022 Jun;319:111263. (PMID: 35487669)
Front Plant Sci. 2020 May 08;11:525. (PMID: 32457775)
DNA Cell Biol. 2017 Nov;36(11):938-946. (PMID: 28945464)
Zhongguo Zhong Yao Za Zhi. 2015 Jun;40(11):2055-61. (PMID: 26552157)
Curr Protoc Bioinformatics. 2017 Dec 8;60:3.15.1-3.15.23. (PMID: 29220076)
Proc Natl Acad Sci U S A. 2012 Aug 14;109(33):13452-7. (PMID: 22847437)
Int J Mol Sci. 2022 Apr 13;23(8):. (PMID: 35457106)
BMC Genomics. 2015 Dec 09;16:1039. (PMID: 26645802)
Plant Signal Behav. 2010 Oct;5(10):1260-2. (PMID: 20861681)
Nucleic Acids Res. 2022 Jan 7;50(D1):D439-D444. (PMID: 34791371)
BMC Plant Biol. 2013 Jul 20;13:105. (PMID: 23870482)
Proc Natl Acad Sci U S A. 2012 Jan 31;109(5):1560-5. (PMID: 22238427)
Front Plant Sci. 2022 Oct 20;13:980933. (PMID: 36340369)
J Ethnopharmacol. 2012 Aug 30;143(1):116-50. (PMID: 22728167)
Plant Cell Rep. 2019 Aug;38(8):951-963. (PMID: 31062133)
المشرفين على المادة: 0 (MADS Domain Proteins)
0 (Plant Proteins)
تواريخ الأحداث: Date Created: 20240205 Date Completed: 20240207 Latest Revision: 20240207
رمز التحديث: 20240207
مُعرف محوري في PubMed: PMC10843124
DOI: 10.1371/journal.pone.0294426
PMID: 38315679
قاعدة البيانات: MEDLINE
الوصف
تدمد:1932-6203
DOI:10.1371/journal.pone.0294426