دورية أكاديمية
Transcriptome sequencing and screening of genes related to the MADS-box gene family in Clematis courtoisii.
العنوان: | Transcriptome sequencing and screening of genes related to the MADS-box gene family in Clematis courtoisii. |
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المؤلفون: | Chen M; Department of Ornamental Plant Research Center, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China., Li L; Department of Ornamental Plant Research Center, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China., Wang S; Department of Ornamental Plant Research Center, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China., Wang P; Department of Ornamental Plant Research Center, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China., Li Y; Department of Ornamental Plant Research Center, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China. |
المصدر: | PloS one [PLoS One] 2024 Feb 05; Vol. 19 (2), pp. e0294426. Date of Electronic Publication: 2024 Feb 05 (Print Publication: 2024). |
نوع المنشور: | Journal Article |
اللغة: | English |
بيانات الدورية: | Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE |
أسماء مطبوعة: | Original Publication: San Francisco, CA : Public Library of Science |
مواضيع طبية MeSH: | Clematis*/genetics, Transcriptome ; MADS Domain Proteins/genetics ; MADS Domain Proteins/metabolism ; Genes, Plant ; Multigene Family ; Plants/genetics ; Phylogeny ; Gene Expression Regulation, Plant ; Plant Proteins/genetics ; Plant Proteins/metabolism |
مستخلص: | The MADS-box gene family controls plant flowering and floral organ development; therefore, it is particularly important in ornamental plants. To investigate the genes associated with the MADS-box family in Clematis courtoisii, we performed full-length transcriptome sequencing on C. courtoisii using the PacBio Sequel third-generation sequencing platform, as no reference genome data was available. A total of 12.38 Gb of data, containing 9,476,585 subreads and 50,439 Unigenes were obtained. According to functional annotation, a total of 37,923 Unigenes (75.18% of the total) were assigned with functional annotations, and 50 Unigenes were identified as MADS-box related genes. Subsequently, we employed hmmerscan to perform protein sequence similarity search for the translated Unigene sequences and successfully identified 19 Unigenes associated with the MADS-box gene family, including MIKC*(1) and MIKCC (18) genes. Furthermore, within the MIKCC group, six subclasses can be further distinguished. Competing Interests: The authors have declared that no competing interests exist. (Copyright: © 2024 Chen et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.) |
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المشرفين على المادة: | 0 (MADS Domain Proteins) 0 (Plant Proteins) |
تواريخ الأحداث: | Date Created: 20240205 Date Completed: 20240207 Latest Revision: 20240207 |
رمز التحديث: | 20240207 |
مُعرف محوري في PubMed: | PMC10843124 |
DOI: | 10.1371/journal.pone.0294426 |
PMID: | 38315679 |
قاعدة البيانات: | MEDLINE |
تدمد: | 1932-6203 |
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DOI: | 10.1371/journal.pone.0294426 |