دورية أكاديمية
أعرض في EDS

The draft genome of Spiraea crenata L. (Rosaceae) - the first complete genome in tribe Spiraeeae.

التفاصيل البيبلوغرافية
العنوان: The draft genome of Spiraea crenata L. (Rosaceae) - the first complete genome in tribe Spiraeeae.
المؤلفون: Laczkó L; Department of Metagenomics, University of Debrecen, Debrecen, Hungary.; HUN-REN-UD Conservation Biology Research Group, University of Debrecen, Debrecen, Hungary., Jordán S; Department of Metagenomics, University of Debrecen, Debrecen, Hungary.; HUN-REN-UD Conservation Biology Research Group, University of Debrecen, Debrecen, Hungary.; Juhász-Nagy Pál Doctoral School, University of Debrecen, Debrecen, Hungary., Póliska S; Department of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Debrecen, Hungary., Rácz HV; Department of Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, Debrecen, Hungary., Nagy NA; Department of Evolutionary Zoology and Human Biology, Faculty of Science and Technology, University of Debrecen, Debrecen, Hungary.; HUN-REN-UD Behavioural Ecology Research Group, University of Debrecen, Debrecen, Hungary., Molnár V A; HUN-REN-UD Conservation Biology Research Group, University of Debrecen, Debrecen, Hungary.; Evolutionary Genomics Research Group, Department of Botany, Faculty of Science and Technology, University of Debrecen, Debrecen, Hungary., Sramkó G; HUN-REN-UD Conservation Biology Research Group, University of Debrecen, Debrecen, Hungary. sramko.gabor@science.unideb.hu.; Evolutionary Genomics Research Group, Department of Botany, Faculty of Science and Technology, University of Debrecen, Debrecen, Hungary. sramko.gabor@science.unideb.hu.
المصدر: Scientific data [Sci Data] 2024 Feb 17; Vol. 11 (1), pp. 219. Date of Electronic Publication: 2024 Feb 17.
نوع المنشور: Dataset; Journal Article
اللغة: English
بيانات الدورية: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101640192 Publication Model: Electronic Cited Medium: Internet ISSN: 2052-4463 (Electronic) Linking ISSN: 20524463 NLM ISO Abbreviation: Sci Data Subsets: MEDLINE
أسماء مطبوعة: Original Publication: London : Nature Publishing Group, 2014-
مواضيع طبية MeSH: Spiraea* , Genome, Plant*, Genomics ; Whole Genome Sequencing
مستخلص: Spiraea crenata L. is a deciduous shrub distributed across the Eurasian steppe zone. The species is of cultural and horticultural importance and occurs in scattered populations throughout its westernmost range. Currently, there is no genomic information on the tribe of Spiraeeae. Therefore we sequenced and assembled the whole genome of S. crenata using second- and third-generation sequencing and a hybrid assembly approach to expand genomic resources for conservation and support research on this horticulturally important lineage. In addition to the organellar genomes (the plastome and the mitochondrion), we present the first draft genome of the species with an estimated size of 220 Mbp, an N50 value of 7.7 Mbp, and a BUSCO score of 96.0%. Being the first complete genome in tribe Spiraeeae, this may not only be the first step in the genomic study of a rare plant but also a contribution to genomic resources supporting the study of biodiversity and evolutionary history of Rosaceae.
(© 2024. The Author(s).)
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تواريخ الأحداث: Date Created: 20240217 Date Completed: 20240219 Latest Revision: 20240319
رمز التحديث: 20240319
مُعرف محوري في PubMed: PMC10874383
DOI: 10.1038/s41597-024-03046-0
PMID: 38368431
قاعدة البيانات: MEDLINE
الوصف
تدمد:2052-4463
DOI:10.1038/s41597-024-03046-0