دورية أكاديمية

The desert woodrat (Neotoma lepida) induces a diversity of biotransformation genes in response to creosote bush resin.

التفاصيل البيبلوغرافية
العنوان: The desert woodrat (Neotoma lepida) induces a diversity of biotransformation genes in response to creosote bush resin.
المؤلفون: Greenhalgh R; School of Biological Sciences, University of Utah, 257 S 1400 E, Salt Lake City, UT 84112, USA. Electronic address: robert.greenhalgh@utah.edu., Klure DM; School of Biological Sciences, University of Utah, 257 S 1400 E, Salt Lake City, UT 84112, USA. Electronic address: dylan.klure@utah.edu., Orr TJ; School of Biological Sciences, University of Utah, 257 S 1400 E, Salt Lake City, UT 84112, USA. Electronic address: teriorr@nmsu.edu., Armstrong NM; School of Biological Sciences, University of Utah, 257 S 1400 E, Salt Lake City, UT 84112, USA. Electronic address: u1220939@utah.edu., Shapiro MD; School of Biological Sciences, University of Utah, 257 S 1400 E, Salt Lake City, UT 84112, USA. Electronic address: mike.shapiro@utah.edu., Dearing MD; School of Biological Sciences, University of Utah, 257 S 1400 E, Salt Lake City, UT 84112, USA. Electronic address: denise.dearing@utah.edu.
المصدر: Comparative biochemistry and physiology. Toxicology & pharmacology : CBP [Comp Biochem Physiol C Toxicol Pharmacol] 2024 Jun; Vol. 280, pp. 109870. Date of Electronic Publication: 2024 Feb 28.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Elsevier Science Country of Publication: United States NLM ID: 100959500 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1532-0456 (Print) Linking ISSN: 15320456 NLM ISO Abbreviation: Comp Biochem Physiol C Toxicol Pharmacol Subsets: MEDLINE
أسماء مطبوعة: Original Publication: New York, NY : Elsevier Science, c2000-
مواضيع طبية MeSH: Larrea*/metabolism, Humans ; Animals ; Creosote/toxicity ; Creosote/metabolism ; Herbivory/genetics ; Biotransformation ; Rodentia/metabolism ; Sigmodontinae/genetics ; Sigmodontinae/metabolism
مستخلص: Liver biotransformation enzymes have long been thought to enable animals to feed on diets rich in xenobiotic compounds. However, despite decades of pharmacological research in humans and rodents, little is known about hepatic gene expression in specialized mammalian herbivores feeding on toxic diets. Leveraging a recently identified population of the desert woodrat (Neotoma lepida) found to be highly tolerant to toxic creosote bush (Larrea tridentata), we explored the expression changes of suites of biotransformation genes in response to diets enriched with varying amounts of creosote resin. Analysis of hepatic RNA-seq data indicated a dose-dependent response to these compounds, including the upregulation of several genes encoding transcription factors and numerous phase I, II, and III biotransformation families. Notably, elevated expression of five biotransformation families - carboxylesterases, cytochromes P450, aldo-keto reductases, epoxide hydrolases, and UDP-glucuronosyltransferases - corresponded to species-specific duplication events in the genome, suggesting that these genes play a prominent role in N. lepida's adaptation to creosote bush. Building on pharmaceutical studies in model rodents, we propose a hypothesis for how the differentially expressed genes are involved in the biotransformation of creosote xenobiotics. Our results provide some of the first details about how these processes likely operate in the liver of a specialized mammalian herbivore.
Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
(Copyright © 2024 Elsevier Inc. All rights reserved.)
References: Genome Res. 2017 May;27(5):849-864. (PMID: 28396521)
Bioinformatics. 2021 Jul 19;37(12):1639-1643. (PMID: 33320174)
Elife. 2018 Feb 26;7:. (PMID: 29481323)
Physiol Biochem Zool. 2008 Sep-Oct;81(5):584-93. (PMID: 18752424)
Pharmacol Ther. 2005 Jun;106(3):357-87. (PMID: 15922018)
Nat Commun. 2014;5:2958. (PMID: 24389582)
Proc Natl Acad Sci U S A. 2007 Mar 20;104(12):4996-5001. (PMID: 17360391)
Drug Metab Dispos. 1998 Jun;26(6):507-12. (PMID: 9616184)
Annu Rev Pharmacol Toxicol. 2005;45:51-88. (PMID: 15822171)
Arch Biochem Biophys. 1997 Apr 15;340(2):270-8. (PMID: 9143331)
Pharmacogenetics. 1997 Dec;7(6):485-95. (PMID: 9429234)
Pharmaceuticals (Basel). 2012;5(11):1147-59. (PMID: 23580869)
Expert Opin Drug Metab Toxicol. 2012 Jul;8(7):803-17. (PMID: 22554043)
J Ethnopharmacol. 2005 Apr 26;98(3):231-9. (PMID: 15814253)
Hepatology. 2011 Mar;53(3):945-53. (PMID: 21319188)
Nutrients. 2021 May 12;13(5):. (PMID: 34066075)
Innovation (Camb). 2021 Jul 01;2(3):100141. (PMID: 34557778)
Toxicol Sci. 2011 Mar;120 Suppl 1:S49-75. (PMID: 21059794)
Crit Rev Toxicol. 2019 Nov;49(10):819-929. (PMID: 31944156)
Oecologia. 2000 May;123(3):397-405. (PMID: 28308595)
Drug Metab Rev. 2011 May;43(2):92-137. (PMID: 21495793)
Arch Toxicol. 2009 Apr;83(4):297-318. (PMID: 19340413)
Comp Funct Genomics. 2008;:545269. (PMID: 18815629)
Mol Biol Evol. 2013 Apr;30(4):772-80. (PMID: 23329690)
Drug Metab Rev. 2008;40(4):553-624. (PMID: 18949601)
Funct Ecol. 2022 Aug;36(8):2119-2131. (PMID: 37727272)
PLoS One. 2015 Sep 22;10(9):e0138203. (PMID: 26394137)
Curr Opin Endocrinol Diabetes Obes. 2009 Apr;16(2):172-7. (PMID: 19306529)
J Biol Chem. 2003 Oct 31;278(44):42906-12. (PMID: 12917409)
Biochim Open. 2018 Jun 11;7:1-9. (PMID: 30003042)
Curr Drug Metab. 2003 Dec;4(6):515-25. (PMID: 14683479)
J Biol Chem. 2005 Feb 11;280(6):4483-90. (PMID: 15574414)
Bioinformatics. 2014 May 1;30(9):1236-40. (PMID: 24451626)
Microbiome. 2020 Apr 3;8(1):48. (PMID: 32245390)
Genome Biol. 2014;15(12):550. (PMID: 25516281)
Pflugers Arch. 2007 Feb;453(5):661-73. (PMID: 16586096)
Bioinformatics. 2019 Jun 1;35(12):2084-2092. (PMID: 30395178)
Drug Metab Dispos. 2006 Oct;34(10):1772-8. (PMID: 16855052)
Genes Dev. 2012 Apr 1;26(7):657-67. (PMID: 22474260)
Prog Neurobiol. 2013 Jan;100:30-47. (PMID: 23025925)
Int J Mol Sci. 2018 Jun 05;19(6):. (PMID: 29874826)
Genomics Proteomics Bioinformatics. 2023 Feb;21(1):203-215. (PMID: 35718271)
PLoS Genet. 2007 May 11;3(5):e67. (PMID: 17500592)
Biochim Biophys Acta Mol Cell Res. 2018 May;1865(5):721-733. (PMID: 29499228)
Genet Med. 2002 Mar-Apr;4(2):62-70. (PMID: 11882782)
Biochim Biophys Acta. 1984 Jul 31;788(2):167-80. (PMID: 6331513)
PLoS Comput Biol. 2019 Feb 6;15(2):e1006790. (PMID: 30726205)
J Biol Chem. 2010 Jun 11;285(24):18888-98. (PMID: 20392701)
Curr Opin Insect Sci. 2019 Dec;36:149-156. (PMID: 31698152)
Carcinogenesis. 2012 Sep;33(9):1806-13. (PMID: 22791808)
Mol Biol Evol. 2020 Jan 1;37(1):291-294. (PMID: 31432070)
J Biochem Mol Toxicol. 2007;21(4):176-81. (PMID: 17936931)
J Chem Ecol. 2006 Jun;32(6):1229-46. (PMID: 16770715)
J Xenobiot. 2021 Jun 22;11(3):94-114. (PMID: 34206277)
Pharmacogenomics J. 2005;5(1):6-13. (PMID: 15492763)
Bioinformatics. 2019 Nov 1;35(21):4453-4455. (PMID: 31070718)
Hum Mutat. 2008 Jul;29(7):921-30. (PMID: 18449899)
Physiol Rev. 2019 Apr 1;99(2):1153-1222. (PMID: 30724669)
Drug Metab Dispos. 2014 Jan;42(1):94-104. (PMID: 24131672)
Liver Res. 2020 Jun;4(2):47-63. (PMID: 34290896)
Nucleic Acids Res. 2022 Jan 7;50(D1):D20-D26. (PMID: 34850941)
Nucleic Acids Res. 2021 Jul 2;49(W1):W293-W296. (PMID: 33885785)
J Biol Chem. 2004 Jan 9;279(2):1429-41. (PMID: 14557274)
Toxicol Appl Pharmacol. 2014 Feb 1;274(3):393-401. (PMID: 24361551)
F1000Res. 2015 Dec 30;4:1521. (PMID: 26925227)
Int J Mol Sci. 2021 Jan 13;22(2):. (PMID: 33451129)
Proc Natl Acad Sci U S A. 2016 May 24;113(21):5988-92. (PMID: 27162370)
Genome Biol. 2002;3(2):RESEARCH0008. (PMID: 11864370)
Wellcome Open Res. 2021 May 18;6:118. (PMID: 34660910)
Redox Biol. 2022 Nov;57:102470. (PMID: 36174386)
Drug Metab Dispos. 2014 Aug;42(8):1241-51. (PMID: 24816681)
Pharmacol Ther. 2010 Apr;126(1):9-20. (PMID: 20153368)
Drug Metab Dispos. 2008 Jun;36(6):1063-72. (PMID: 18332083)
J Lipid Res. 2018 Jul;59(7):1103-1113. (PMID: 29728459)
Trends Endocrinol Metab. 2013 Dec;24(12):635-43. (PMID: 24182456)
Protein Cell. 2018 Feb;9(2):178-195. (PMID: 28677105)
J Clin Invest. 2002 May;109(9):1125-31. (PMID: 11994399)
Nat Genet. 2018 Aug;50(8):1102-1111. (PMID: 29967444)
Integr Comp Biol. 2009 Sep;49(3):274-90. (PMID: 21665820)
Sci Adv. 2019 Jul 24;5(7):eaaw6441. (PMID: 31355335)
Biomolecules. 2021 Apr 16;11(4):. (PMID: 33923744)
Oxid Med Cell Longev. 2017;2017:4680732. (PMID: 28163821)
Curr Drug Metab. 2019;20(2):91-102. (PMID: 30129408)
Trends Biochem Sci. 2014 Apr;39(4):199-218. (PMID: 24647116)
PLoS One. 2012;7(8):e41510. (PMID: 22927909)
Drug Metab Dispos. 1992 May-Jun;20(3):440-5. (PMID: 1521503)
J Mol Biol. 2016 Feb 22;428(4):726-731. (PMID: 26585406)
J Oleo Sci. 2012;61(1):35-43. (PMID: 22188805)
Proc Natl Acad Sci U S A. 2015 Mar 10;112(10):3026-31. (PMID: 25624509)
J Chem Ecol. 2001 Dec;27(12):2559-78. (PMID: 11789959)
Drug Metab Dispos. 2018 Mar;46(3):248-258. (PMID: 29237721)
Biochem Soc Trans. 2010 Oct;38(5):1378-85. (PMID: 20863317)
Mol Ecol. 2020 May;29(9):1674-1683. (PMID: 32246507)
Nat Methods. 2017 Apr;14(4):417-419. (PMID: 28263959)
Methods Enzymol. 2002;347:279-86. (PMID: 11898417)
Brief Funct Genomics. 2015 Nov;14(6):413-23. (PMID: 25846754)
Curr Opin Toxicol. 2018 Feb;7:44-51. (PMID: 29527583)
Nucleic Acids Res. 2016 Jan 4;44(D1):D733-45. (PMID: 26553804)
Steroids. 2007 Mar;72(3):231-46. (PMID: 17284330)
Antioxidants (Basel). 2022 Nov 27;11(12):. (PMID: 36552553)
Genome Res. 2017 Sep;27(9):1461-1474. (PMID: 28743766)
Animals (Basel). 2022 Oct 27;12(21):. (PMID: 36359081)
Biomed Pharmacother. 2005 Aug;59(7):374-9. (PMID: 16102934)
Mol Ecol. 2009 Jun;18(11):2401-14. (PMID: 19389177)
J Lipid Res. 2006 Sep;47(9):1915-27. (PMID: 16788211)
Mol Ecol. 2018 Feb;27(3):723-736. (PMID: 29319892)
Drug Metab Pharmacokinet. 2015 Feb;30(1):30-51. (PMID: 25760529)
BMC Bioinformatics. 2009 Dec 15;10:421. (PMID: 20003500)
Ecol Lett. 2014 Oct;17(10):1238-46. (PMID: 25040855)
Front Pharmacol. 2016 Oct 24;7:388. (PMID: 27822186)
Mol Ecol Resour. 2022 Oct;22(7):2713-2731. (PMID: 35599377)
Animals (Basel). 2022 Oct 18;12(20):. (PMID: 36290207)
BMC Ecol. 2014 Aug 15;14:23. (PMID: 25123454)
Nature. 2002 Dec 5;420(6915):520-62. (PMID: 12466850)
J Inflamm Res. 2020 Dec 02;13:1057-1073. (PMID: 33293849)
معلومات مُعتمدة: R35 GM131787 United States GM NIGMS NIH HHS; T32 GM141848 United States GM NIGMS NIH HHS
فهرسة مساهمة: Keywords: Biotransformation; Creosote bush; Differential expression; Transcriptomics; Woodrats
المشرفين على المادة: 8021-39-4 (Creosote)
تواريخ الأحداث: Date Created: 20240301 Date Completed: 20240412 Latest Revision: 20240425
رمز التحديث: 20240425
مُعرف محوري في PubMed: PMC11006593
DOI: 10.1016/j.cbpc.2024.109870
PMID: 38428625
قاعدة البيانات: MEDLINE
الوصف
تدمد:1532-0456
DOI:10.1016/j.cbpc.2024.109870