دورية أكاديمية
أعرض في EDS

Investigating the relationship between microbial network features of giant kelp "seedbank" cultures and subsequent farm performance.

التفاصيل البيبلوغرافية
العنوان: Investigating the relationship between microbial network features of giant kelp "seedbank" cultures and subsequent farm performance.
المؤلفون: Osborne MG; Department of Molecular and Computational Biology, University of Southern California, Los Angeles, CA, United States of America., Simons AL; Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA, United States of America., Molano G; Department of Molecular and Computational Biology, University of Southern California, Los Angeles, CA, United States of America., Tolentino B; Department of Marine and Environmental Biology, University of Southern California, Los Angeles, CA, United States of America., Singh A; Department of Molecular and Computational Biology, University of Southern California, Los Angeles, CA, United States of America., Arismendi GJM; Department of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, United States of America., Alberto F; Department of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, United States of America., Nuzhdin SV; Department of Molecular and Computational Biology, University of Southern California, Los Angeles, CA, United States of America.
المصدر: PloS one [PLoS One] 2024 Mar 27; Vol. 19 (3), pp. e0295740. Date of Electronic Publication: 2024 Mar 27 (Print Publication: 2024).
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE
أسماء مطبوعة: Original Publication: San Francisco, CA : Public Library of Science
مواضيع طبية MeSH: Kelp* , Macrocystis*, Biomass ; Farms ; Microbial Consortia
مستخلص: Microbial inoculants can increase the yield of cultivated crops and are successful in independent trials; however, efficacy drops in large-scale applications due to insufficient consideration of microbial community dynamics. The structure of microbiomes, in addition to the impact of individual taxa, is an important factor to consider when designing growth-promoting inoculants. Here, we investigate the microbial network and community assembly patterns of Macrocystis pyrifera gametophyte germplasm cultures (collectively referred to as a "seedbank") used to cultivate an offshore farm in Santa Barbara, California, and identify network features associated with increased biomass of mature sporophytes. We found that [1] several network features, such as clustering coefficient and edge ratios, significantly vary with biomass outcomes; [2] gametophytes that become low- or high-biomass sporophytes have different hub taxa; and [3] microbial community assembly of gametophyte germplasm cultures is niche-driven. Overall, this study describes microbial community dynamics in M. pyrifera germplasm cultures and ultimately supports the development of early life stage inoculants that can be used on seaweed cultivars to increase biomass yield.
Competing Interests: The authors have declared that no competing interests exist.
(Copyright: © 2024 Osborne et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
References: Appl Microbiol Biotechnol. 2016 Jul;100(13):5729-46. (PMID: 27188775)
R Soc Open Sci. 2017 Jan 11;4(1):160757. (PMID: 28280579)
Trends Microbiol. 2017 Mar;25(3):217-228. (PMID: 27916383)
Biotechnol Adv. 2019 Nov 1;37(6):107371. (PMID: 30890361)
PLoS Comput Biol. 2015 May 07;11(5):e1004226. (PMID: 25950956)
Am Nat. 2014 Nov;184(5):684-94. (PMID: 25325751)
Front Microbiol. 2016 Nov 14;7:1800. (PMID: 27895628)
Environ Microbiol. 2019 Feb;21(2):730-749. (PMID: 30672084)
J Phycol. 2023 Apr;59(2):402-417. (PMID: 36727292)
NPJ Biofilms Microbiomes. 2022 Jan 17;8(1):3. (PMID: 35039527)
AMB Express. 2019 Dec 21;9(1):205. (PMID: 31865554)
PLoS Comput Biol. 2012;8(9):e1002687. (PMID: 23028285)
PLoS One. 2013 Apr 22;8(4):e61217. (PMID: 23630581)
Nat Plants. 2018 May;4(5):247-257. (PMID: 29725101)
Front Plant Sci. 2019 Nov 06;10:1357. (PMID: 31781135)
Bioinformatics. 2018 Sep 1;34(17):i884-i890. (PMID: 30423086)
Ecology. 2019 Nov;100(11):e02832. (PMID: 31323117)
Ecol Lett. 2018 Feb;21(2):167-180. (PMID: 29280282)
Front Plant Sci. 2017 Feb 09;8:49. (PMID: 28232839)
Nucleic Acids Res. 2013 Jan;41(Database issue):D590-6. (PMID: 23193283)
Microbiol Res. 2008;163(2):234-42. (PMID: 16831538)
PLoS Biol. 2016 Jan 20;14(1):e1002352. (PMID: 26788878)
mSphere. 2021 Aug 25;6(4):e0013021. (PMID: 34378980)
J Appl Microbiol. 2015 Nov;119(5):1371-82. (PMID: 26294004)
PeerJ. 2017 Nov 17;5:e4073. (PMID: 29158994)
Mol Ecol. 2015 Oct;24(19):4866-85. (PMID: 26339775)
FEMS Microbiol Rev. 2013 May;37(3):462-76. (PMID: 23157386)
Mol Ecol Resour. 2015 Nov;15(6):1403-14. (PMID: 25732605)
J Phycol. 2011 Feb;47(1):5-12. (PMID: 27021705)
Annu Rev Plant Biol. 2013;64:807-38. (PMID: 23373698)
Nat Biotechnol. 2013 Sep;31(9):814-21. (PMID: 23975157)
Ecology. 2017 Apr;98(4):909-919. (PMID: 27984663)
PeerJ. 2018 Jun 12;6:e5030. (PMID: 29910992)
تواريخ الأحداث: Date Created: 20240327 Date Completed: 20240329 Latest Revision: 20240430
رمز التحديث: 20240430
مُعرف محوري في PubMed: PMC10971754
DOI: 10.1371/journal.pone.0295740
PMID: 38536857
قاعدة البيانات: MEDLINE
الوصف
تدمد:1932-6203
DOI:10.1371/journal.pone.0295740