دورية أكاديمية
أعرض في EDS

Unveiling the genomic landscape of Salmonella enterica serotypes Typhimurium, Newport, and Infantis in Latin American surface waters: a comparative analysis.

التفاصيل البيبلوغرافية
العنوان: Unveiling the genomic landscape of Salmonella enterica serotypes Typhimurium, Newport, and Infantis in Latin American surface waters: a comparative analysis.
المؤلفون: Chen Z; Joint Institute for Food Safety and Applied Nutrition and Center for Food Safety and Security Systems, University of Maryland, College Park, Maryland, USA., Toro M; Joint Institute for Food Safety and Applied Nutrition and Center for Food Safety and Security Systems, University of Maryland, College Park, Maryland, USA.; Instituto de Nutrición y Tecnología de los Alimentos, Universidad de Chile, Santiago, Chile., Moreno-Switt AI; Escuela de Medicina Veterinaria, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile., Adell AD; Escuela de Medicina Veterinaria, Facultad de Ciencias de la Vida, Facultad de Agronomía y Sistemas Naturales, Facultad de Ciencias Biológicas y Facultad de Medicina, Universidad Andrés Bello, Santiago, Chile., Delgado-Suárez EJ; Facultad de Medicina Veterinaria y Zootecnia, Universidad de Nacional Autónoma de México, Mexico City, Mexico., Bonelli RR; Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil., Oliveira CJB; Departamento de Zootecnia, Universidade Federal da Paraíba, Areia, Brazil., Reyes-Jara A; Instituto de Nutrición y Tecnología de los Alimentos, Universidad de Chile, Santiago, Chile., Huang X; Joint Institute for Food Safety and Applied Nutrition and Center for Food Safety and Security Systems, University of Maryland, College Park, Maryland, USA.; Department of Nutrition and Food Science, University of Maryland, College Park, Maryland, USA., Albee B; Center for Food Safety and Applied Nutrition, United States Food and Drug Administration, College Park, Maryland, USA., Grim CJ; Center for Food Safety and Applied Nutrition, United States Food and Drug Administration, College Park, Maryland, USA., Allard M; Center for Food Safety and Applied Nutrition, United States Food and Drug Administration, College Park, Maryland, USA., Tallent SM; Center for Food Safety and Applied Nutrition, United States Food and Drug Administration, College Park, Maryland, USA., Brown EW; Center for Food Safety and Applied Nutrition, United States Food and Drug Administration, College Park, Maryland, USA., Bell RL; Center for Food Safety and Applied Nutrition, United States Food and Drug Administration, College Park, Maryland, USA., Meng J; Joint Institute for Food Safety and Applied Nutrition and Center for Food Safety and Security Systems, University of Maryland, College Park, Maryland, USA.; Department of Nutrition and Food Science, University of Maryland, College Park, Maryland, USA.
المصدر: Microbiology spectrum [Microbiol Spectr] 2024 May 02; Vol. 12 (5), pp. e0004724. Date of Electronic Publication: 2024 Mar 28.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Comparative Study
اللغة: English
بيانات الدورية: Publisher: ASM Press Country of Publication: United States NLM ID: 101634614 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2165-0497 (Electronic) Linking ISSN: 21650497 NLM ISO Abbreviation: Microbiol Spectr Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Washington, DC : ASM Press, 2013-
مواضيع طبية MeSH: Salmonella enterica*/genetics , Salmonella enterica*/isolation & purification , Salmonella enterica*/classification , Salmonella enterica*/drug effects , Phylogeny* , Serogroup* , Drug Resistance, Multiple, Bacterial*/genetics , Salmonella typhimurium*/genetics , Salmonella typhimurium*/isolation & purification , Salmonella typhimurium*/drug effects , Salmonella typhimurium*/classification, Brazil ; Mexico ; Integrons/genetics ; Genome, Bacterial ; Chile ; Genomics ; Anti-Bacterial Agents/pharmacology ; Latin America ; Water Microbiology ; Polymorphism, Single Nucleotide ; Plasmids/genetics ; Microbial Sensitivity Tests
مستخلص: Surface waters are considered ecological habitats where Salmonella enterica can persist and disseminate to fresh produce production systems. This study aimed to explore the genomic profiles of S. enterica serotypes Typhimurium, Newport, and Infantis from surface waters in Chile, Mexico, and Brazil collected between 2019 and 2022. We analyzed the whole genomes of 106 S . Typhimurium, 161 S . Newport, and 113 S . Infantis isolates. Our phylogenetic analysis exhibited distinct groupings of isolates by their respective countries except for a notable case involving a Chilean S . Newport isolate closely related to two Mexican isolates, showing 4 and 13 single nucleotide polymorphisms of difference, respectively. The patterns of the most frequently detected antimicrobial resistance genes varied across countries and serotypes. A strong correlation existed between integron carriage and genotypic multidrug resistance (MDR) across serotypes in Chile and Mexico ( R > 0.90, P < 0.01), while integron(s) were not detected in any of the Brazilian isolates. By contrast, we did not identify any strong correlation between plasmid carriage and genotypic MDR across diverse countries and serotypes.IMPORTANCEUnveiling the genomic landscape of S. enterica in Latin American surface waters is pivotal for ensuring public health. This investigation sheds light on the intricate genomic diversity of S. enterica in surface waters across Chile, Mexico, and Brazil. Our research also addresses critical knowledge gaps, pioneering a comprehensive understanding of surface waters as a reservoir for multidrug-resistant S. enterica . By integrating our understanding of integron carriage as biomarkers into broader MDR control strategies, we can also work toward targeted interventions that mitigate the emergence and dissemination of MDR in S. enterica in surface waters. Given its potential implications for food safety, this study emphasizes the critical need for informed policies and collaborative initiatives to address the risks associated with S. enterica in surface waters.
Competing Interests: The authors declare no conflict of interest.
References: Environ Pollut. 2022 Aug 1;306:119298. (PMID: 35430308)
Bioinformatics. 2015 Nov 15;31(22):3691-3. (PMID: 26198102)
PLOS Glob Public Health. 2023 Feb 1;3(2):e0001305. (PMID: 36963007)
J Antimicrob Chemother. 2018 May 1;73(5):1121-1137. (PMID: 29370371)
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D325-8. (PMID: 15608208)
EcoSal Plus. 2021 Dec 15;9(2):eESP00082020. (PMID: 34125583)
J Antimicrob Chemother. 2014 Mar;69(3):827-34. (PMID: 24216767)
Genome Res. 2018 Sep;28(9):1395-1404. (PMID: 30049790)
Front Microbiol. 2023 Aug 31;14:1231938. (PMID: 37720149)
PLoS One. 2020 Jul 2;15(7):e0235641. (PMID: 32614888)
Clin Microbiol Rev. 2013 Apr;26(2):185-230. (PMID: 23554414)
Antimicrob Agents Chemother. 2010 Jan;54(1):367-74. (PMID: 19917752)
Microorganisms. 2022 Mar 24;10(4):. (PMID: 35456751)
Turk J Emerg Med. 2018 Aug 07;18(3):91-93. (PMID: 30191186)
Environ Res. 2019 Jan;168:7-13. (PMID: 30253315)
BMC Bioinformatics. 2010 Dec 10;11:595. (PMID: 21143983)
J Appl Microbiol. 2015 Oct;119(4):970-80. (PMID: 26249136)
Jpn J Infect Dis. 2005 Dec;58(6):369-72. (PMID: 16377870)
Bioinformatics. 2014 Aug 1;30(15):2114-20. (PMID: 24695404)
Vet Microbiol. 2014 Jul 16;171(3-4):307-14. (PMID: 24613291)
J Antimicrob Chemother. 2006 Aug;58(2):305-9. (PMID: 16782743)
Antimicrob Agents Chemother. 2003 Mar;47(3):883-8. (PMID: 12604516)
J Infect Dis. 2017 Feb 15;215(suppl_1):S9-S17. (PMID: 28375515)
J Food Prot. 2004 Dec;67(12):2839-49. (PMID: 15633699)
PLoS One. 2021 May 5;16(5):e0243681. (PMID: 33951039)
Microb Drug Resist. 2010 Sep;16(3):185-90. (PMID: 20704512)
J Pathog. 2013;2013:685193. (PMID: 24455280)
Appl Environ Microbiol. 2014 Nov;80(21):6819-27. (PMID: 25172861)
Antimicrob Agents Chemother. 2000 Nov;44(11):3137-43. (PMID: 11036037)
J Lab Clin Med. 2002 Sep;140(3):135-41. (PMID: 12271270)
Microbiol Res. 2018 Jan;206:60-73. (PMID: 29146261)
Nucleic Acids Res. 2021 Jul 2;49(W1):W293-W296. (PMID: 33885785)
Clin Microbiol Infect. 2016 Dec;22(12):968-974. (PMID: 27506509)
Genome Biol. 2014;15(11):524. (PMID: 25410596)
BMC Vet Res. 2021 Jul 2;17(1):234. (PMID: 34215271)
J Microbiol Methods. 2007 Jan;68(1):163-71. (PMID: 16934351)
Sci Rep. 2021 Jun 16;11(1):12728. (PMID: 34135355)
Int J Antimicrob Agents. 2014 Oct;44(4):351-3. (PMID: 25130099)
Cell Microbiol. 2006 Nov;8(11):1707-19. (PMID: 16939533)
J Antimicrob Chemother. 2021 Dec 24;77(1):213-217. (PMID: 34557914)
J Comput Biol. 2012 May;19(5):455-77. (PMID: 22506599)
Microb Genom. 2023 May;9(5):. (PMID: 37200081)
Antimicrob Agents Chemother. 2014 Jul;58(7):3895-903. (PMID: 24777092)
Int J Med Microbiol. 2002 Jul;292(2):115-25. (PMID: 12195734)
Emerg Infect Dis. 2009 Mar;15(3):388-96. (PMID: 19239750)
J Bacteriol. 2010 Dec;192(24):6465-76. (PMID: 20935094)
PLoS Genet. 2018 Apr 5;14(4):e1007261. (PMID: 29621240)
Bioinformatics. 2013 Apr 15;29(8):1072-5. (PMID: 23422339)
Front Microbiol. 2018 Jul 10;9:1482. (PMID: 30042741)
PLoS One. 2010 Mar 10;5(3):e9490. (PMID: 20224823)
Proc Natl Acad Sci U S A. 2015 May 5;112(18):5649-54. (PMID: 25792457)
Annu Rev Microbiol. 2023 Sep 15;77:603-624. (PMID: 37437216)
Front Public Health. 2018 May 30;6:159. (PMID: 29900166)
Microorganisms. 2022 Jan 26;10(2):. (PMID: 35208747)
Appl Environ Microbiol. 2019 Jul 1;85(14):. (PMID: 31053586)
Microorganisms. 2022 Jun 14;10(6):. (PMID: 35744732)
J Water Health. 2014 Dec;12(4):874-84. (PMID: 25473997)
Appl Environ Microbiol. 2022 Mar 8;88(5):e0214921. (PMID: 35020454)
BMC Bioinformatics. 2018 Aug 29;19(1):307. (PMID: 30157759)
Zoonoses Public Health. 2017 Jun;64(4):299-304. (PMID: 27860367)
J Clin Microbiol. 2016 Aug;54(8):1975-83. (PMID: 27008877)
Appl Environ Microbiol. 2011 Apr;77(8):2734-48. (PMID: 21378057)
Bioinformatics. 2014 Jul 15;30(14):2068-9. (PMID: 24642063)
BMC Bioinformatics. 2011 Jan 26;12:35. (PMID: 21269502)
Genome Biol Evol. 2019 Aug 1;11(8):2220-2231. (PMID: 31329231)
Epidemiol Infect. 2017 Oct;145(13):2827-2837. (PMID: 28651652)
معلومات مُعتمدة: U01 FD001418 United States FD FDA HHS; U01FDU001418 HHS | U.S. Food and Drug Administration (FDA)
فهرسة مساهمة: Keywords: Salmonella enterica; biomarker; genetic relatedness; integron; multidrug resistance; surface water; whole-genome sequencing
المشرفين على المادة: 0 (Anti-Bacterial Agents)
تواريخ الأحداث: Date Created: 20240328 Date Completed: 20240502 Latest Revision: 20240517
رمز التحديث: 20240517
مُعرف محوري في PubMed: PMC11064523
DOI: 10.1128/spectrum.00047-24
PMID: 38546218
قاعدة البيانات: MEDLINE
الوصف
تدمد:2165-0497
DOI:10.1128/spectrum.00047-24