دورية أكاديمية
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Differences in diversity and community composition of the shell microbiome of apparently healthy lobsters Homarus americanus across Atlantic Canada.

التفاصيل البيبلوغرافية
العنوان: Differences in diversity and community composition of the shell microbiome of apparently healthy lobsters Homarus americanus across Atlantic Canada.
المؤلفون: Koepper S; Department of Health Management, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, PE, Canada., Clark KF; Department of Animal Sciences and Aquaculture, Faculty of Agriculture, Dalhousie University, Truro, NS, Canada., McClure JT; Department of Health Management, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, PE, Canada., Revie CW; Department of Computer and Information Sciences, University of Strathclyde, Glasgow, United Kingdom., Stryhn H; Department of Health Management, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, PE, Canada., Thakur KK; Department of Health Management, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, PE, Canada.
المصدر: Frontiers in microbiology [Front Microbiol] 2024 Mar 18; Vol. 15, pp. 1320812. Date of Electronic Publication: 2024 Mar 18 (Print Publication: 2024).
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101548977 Publication Model: eCollection Cited Medium: Print ISSN: 1664-302X (Print) Linking ISSN: 1664302X NLM ISO Abbreviation: Front Microbiol Subsets: PubMed not MEDLINE
أسماء مطبوعة: Original Publication: Lausanne : Frontiers Research Foundation
مستخلص: Host-microbe dynamics are of increasing interest in marine research due to their role in host health and productivity. Changes in the shell microbiome of American lobsters have been associated with epizootic shell disease, a syndrome that is spreading northwards across the eastern U.S. and Canadian Atlantic coast. This study analyzed differences in alpha and beta diversity, as well as differentially abundant taxa, in the shell-associated bacterial community of apparently healthy lobsters from four lobster fishing areas (LFAs) in Atlantic Canada. Over 180 lobsters from New Brunswick, Nova Scotia and Prince Edward Island (PEI) were sampled during seven sampling events over four sampling months. The bacterial community was identified using novel PacBio long-read sequencing, while alpha and beta diversity parameters were analyzed using linear regression models and weighted UniFrac distances. The bacterial richness, diversity and evenness differed by sampling location, sampling month, and molt stage, but not by lobster sex or size, nor sampling depth. Similarly, based on LFA, sampling month, year and lobster molt stage, the shell microbiome differed in microbial community composition with up to 34 out of 162 taxa differing significantly in abundance between sampling groups. This large-scale microbial survey suggests that the shell microbial diversity of apparently healthy lobsters is influenced by spatial and temporal factors such as geographic location, as well as the length of time the carapace is exposed to the surrounding seawater.
Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision.
(Copyright © 2024 Koepper, Clark, McClure, Revie, Stryhn and Thakur.)
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فهرسة مساهمة: Keywords: 16S rRNA sequencing; American lobster; UniFrac distance; alpha and beta diversity; aquatic microbiomes
تواريخ الأحداث: Date Created: 20240403 Latest Revision: 20240404
رمز التحديث: 20240404
مُعرف محوري في PubMed: PMC10986177
DOI: 10.3389/fmicb.2024.1320812
PMID: 38567078
قاعدة البيانات: MEDLINE
الوصف
تدمد:1664-302X
DOI:10.3389/fmicb.2024.1320812