دورية أكاديمية
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Comparative genomics reveals insight into the phylogeny and habitat adaptation of novel Amycolatopsis species, an endophytic actinomycete associated with scab lesions on potato tubers.

التفاصيل البيبلوغرافية
العنوان: Comparative genomics reveals insight into the phylogeny and habitat adaptation of novel Amycolatopsis species, an endophytic actinomycete associated with scab lesions on potato tubers.
المؤلفون: Wannawong T; Department of Plant Pathology, Faculty of Agriculture, Kasetsart University, Bangkok, Thailand., Mhuantong W; Food Biotechnology Research Team, Functional Ingredients and Food Innovation Research Group, National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani, Thailand.; Enzyme Technology Research Team, Biorefinery and Bioproducts Technology Research Group, National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani, Thailand., Macharoen P; Department of Plant Pathology, Faculty of Agriculture, Kasetsart University, Bangkok, Thailand., Niemhom N; Microbiological and Molecular Biological Laboratory, Scientific Instruments Center, School of Science, King Mongkut's Institute of Technology Ladkrabang, Bangkok, Thailand., Sitdhipol J; Biodiversity Research Centre, Research and Development Group for Bio-Industries, Thailand Institute of Scientific and Technological Research, Pathum Thani, Thailand., Chaiyawan N; Biodiversity Research Centre, Research and Development Group for Bio-Industries, Thailand Institute of Scientific and Technological Research, Pathum Thani, Thailand., Umrung S; Department of Plant Pathology, Faculty of Agriculture, Kasetsart University, Bangkok, Thailand., Tanasupawat S; Department of Biochemistry and Microbiology, Faculty of Pharmaceutical Sciences, Chulalongkorn University, Bangkok, Thailand., Suwannarach N; Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai, Thailand.; Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand., Asami Y; Graduate School of Infection Control Sciences, Kitasato University, Tokyo, Japan.; Ōmura Satoshi Memorial Institute, Kitasato University, Tokyo, Japan., Kuncharoen N; Department of Plant Pathology, Faculty of Agriculture, Kasetsart University, Bangkok, Thailand.
المصدر: Frontiers in plant science [Front Plant Sci] 2024 Mar 27; Vol. 15, pp. 1346574. Date of Electronic Publication: 2024 Mar 27 (Print Publication: 2024).
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101568200 Publication Model: eCollection Cited Medium: Print ISSN: 1664-462X (Print) Linking ISSN: 1664462X NLM ISO Abbreviation: Front Plant Sci Subsets: PubMed not MEDLINE
أسماء مطبوعة: Original Publication: Lausanne : Frontiers Research Foundation, 2010-
مستخلص: A novel endophytic actinomycete, strain MEP2-6 T , was isolated from scab tissues of potato tubers collected from Mae Fag Mai Sub-district, San Sai District, Chiang Mai Province, Thailand. Strain MEP2-6 T is a gram-positive filamentous bacteria characterized by meso -diaminopimelic acid in cell wall peptidoglycan and arabinose, galactose, glucose, and ribose in whole-cell hydrolysates. Diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, and hydroxy-phosphatidylethanolamine were the major phospholipids, of which MK-9(H 6 ) was the predominant menaquinone, whereas iso-C 16:0 and iso-C 15:0 were the major cellular fatty acids. The genome of the strain was 10,277,369 bp in size with a G + C content of 71.7%. The 16S rRNA gene phylogenetic and core phylogenomic analyses revealed that strain MEP2-6 T was closely related to Amycolatopsis lexingtonensis NRRL B-24131 T (99.4%), A. pretoriensis DSM 44654 T (99.3%), and A. eburnea GLM-1 T (98.9%). Notably, strain MEP2-6 T displayed 91.7%, 91.8%, and 87% ANIb and 49%, 48.8%, and 35.4% dDDH to A. lexingtonensis DSM 44653 T (=NRRL B-24131 T ), A. eburnea GLM-1 T , and A. pretoriensis DSM 44654 T , respectively. Based on phenotypic, chemotaxonomic, and genomic data, strain MEP2-6 T could be officially assigned to a novel species within the genus Amycolatopsis , for which the name Amycolatopsis solani sp. nov. has been proposed. The type of strain is MEP2-6 T (=JCM 36309 T = TBRC 17632 T = NBRC 116395 T ). Amycolatopsis solani MEP2-6 T was strongly proven to be a non-phytopathogen of potato scab disease because stunting of seedlings and necrotic lesions on potato tuber slices were not observed, and there were no core biosynthetic genes associated with the BGCs of phytotoxin-inducing scab lesions. Furthermore, comparative genomics can provide a better understanding of the genetic mechanisms that enable A. solani MEP2-6 T to adapt to the plant endosphere. Importantly, the strain smBGCs accommodated 33 smBGCs encoded for several bioactive compounds, which could be beneficially applied in the fields of agriculture and medicine. Consequently, strain MEP2-6 T is a promising candidate as a novel biocontrol agent and antibiotic producer.
Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
(Copyright © 2024 Wannawong, Mhuantong, Macharoen, Niemhom, Sitdhipol, Chaiyawan, Umrung, Tanasupawat, Suwannarach, Asami and Kuncharoen.)
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فهرسة مساهمة: Keywords: Amycolatopsis; biosynthetic gene cluster; comparative genomics; endophytic actinomycetes; pathogenicity; potato scabby tuber
تواريخ الأحداث: Date Created: 20240411 Latest Revision: 20240425
رمز التحديث: 20240425
مُعرف محوري في PubMed: PMC11004387
DOI: 10.3389/fpls.2024.1346574
PMID: 38601305
قاعدة البيانات: MEDLINE
الوصف
تدمد:1664-462X
DOI:10.3389/fpls.2024.1346574