دورية أكاديمية
Missing history of a modern domesticate: Historical demographics and genetic diversity in farm-bred red fox populations.
| العنوان: | Missing history of a modern domesticate: Historical demographics and genetic diversity in farm-bred red fox populations. |
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| المؤلفون: | Rando HM; Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, United States.; Department of Computer Science, Smith College, Northampton, MA 01063, United States., Alexander EP; Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, United States., Preckler-Quisquater S; Mammalian Ecology and Conservation Unit, Veterinary Genetics Laboratory, School of Veterinary Medicine, University of California, Davis, CA 95616, United States., Quinn CB; Mammalian Ecology and Conservation Unit, Veterinary Genetics Laboratory, School of Veterinary Medicine, University of California, Davis, CA 95616, United States.; National Genomics Center for Wildlife and Fish Conservation, USDA Forest Service, Rocky Mountain Research Station, Missoula, MT, United States., Stutchman JT; Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, United States., Johnson JL; Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, United States., Bastounes ER; Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, United States., Horecka B; Faculty of Animal Sciences and Bioeconomy, Institute of Biological Basis of Animal Production, University of Life Sciences in Lublin, Lublin, Poland., Black KL; Department of Forestry and Wildlife Ecology, University of Wisconsin, Madison, WI 53706, United States., Robson MP; Department of Computer Science, Smith College, Northampton, MA 01063, United States., Shepeleva DV; Institute of Cytology and Genetics of the Russian Academy of Sciences, Novosibirsk 630090, Russia., Herbeck YE; Institute of Cytology and Genetics of the Russian Academy of Sciences, Novosibirsk 630090, Russia.; Koret School of Veterinary Medicine, The Hebrew University of Jerusalem, Rehovot 76100, Israel., Kharlamova AV; Institute of Cytology and Genetics of the Russian Academy of Sciences, Novosibirsk 630090, Russia., Trut LN; Institute of Cytology and Genetics of the Russian Academy of Sciences, Novosibirsk 630090, Russia., Pauli JN; Department of Forestry and Wildlife Ecology, University of Wisconsin, Madison, WI 53706, United States., Sacks BN; Mammalian Ecology and Conservation Unit, Veterinary Genetics Laboratory, School of Veterinary Medicine, University of California, Davis, CA 95616, United States.; Department of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, CA 95616, United States., Kukekova AV; Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, United States. |
| المصدر: | The Journal of heredity [J Hered] 2024 Jul 10; Vol. 115 (4), pp. 411-423. |
| نوع المنشور: | Journal Article |
| اللغة: | English |
| بيانات الدورية: | Publisher: Oxford University Press For The American Genetic Association Country of Publication: United States NLM ID: 0375373 Publication Model: Print Cited Medium: Internet ISSN: 1465-7333 (Electronic) Linking ISSN: 00221503 NLM ISO Abbreviation: J Hered Subsets: MEDLINE |
| أسماء مطبوعة: | Publication: New York, NY : Oxford University Press For The American Genetic Association Original Publication: Baltimore [etc.] American Genetic Assn. |
| مواضيع طبية MeSH: | Foxes*/genetics , Haplotypes* , Genetic Variation*, Animals ; DNA, Mitochondrial/genetics ; Canada ; Genetics, Population ; Animals, Domestic/genetics ; Domestication ; Breeding ; Founder Effect ; Genetic Drift ; Farms |
| مستخلص: | The first record of captive-bred red foxes (Vulpes vulpes) dates to 1896 when a breeding enterprise emerged in the provinces of Atlantic Canada. Because its domestication happened during recent history, the red fox offers a unique opportunity to examine the genetic diversity of an emerging domesticated species in the context of documented historical and economic influences. In particular, the historical record suggests that North American and Eurasian farm-bred populations likely experienced different demographic trajectories. Here, we focus on the likely impacts of founder effects and genetic drift given historical trends in fox farming on North American and Eurasian farms. A total of 15 mitochondrial haplotypes were identified in 369 foxes from 10 farm populations that we genotyped (n = 161) or that were previously published. All haplotypes are endemic to North America. Although most haplotypes were consistent with eastern Canadian ancestry, a small number of foxes carried haplotypes typically found in Alaska and other regions of western North America. The presence of these haplotypes supports historical reports of wild foxes outside of Atlantic Canada being introduced into the breeding stock. These putative Alaskan and Western haplotypes were more frequently identified in Eurasian farms compared to North American farms, consistent with historical documentation suggesting that Eurasian economic and breeding practices were likely to maintain low-frequency haplotypes more effectively than in North America. Contextualizing inter- vs. intra-farm genetic diversity alongside the historical record is critical to understanding the origins of this emerging domesticate and the relationships between wild and farm-bred fox populations. (© The Author(s) 2024. Published by Oxford University Press on behalf of The American Genetic Association. All rights reserved. For commercial re-use, please contact reprints@oup.com for reprints and translation rights for reprints. All other permissions can be obtained through our RightsLink service via the Permissions link on the article page on our site—for further information please contact journals.permissions@oup.com.) |
| References: | Mol Biol Evol. 2018 Jun 1;35(6):1547-1549. (PMID: 29722887) Biol J Linn Soc Lond. 2011 May;103(1):168-175. (PMID: 21625363) Heredity (Edinb). 2022 Aug;129(2):123-136. (PMID: 35314789) Nature. 2002 Aug 8;418(6898):700-7. (PMID: 12167878) J Hered. 2017 Sep 1;108(6):678-685. (PMID: 28821189) Genetics. 2014 Jul;197(3):795-808. (PMID: 25024034) Anim Sci J. 2019 Jul;90(7):827-839. (PMID: 31083798) Bioinformatics. 2008 Jun 1;24(11):1403-5. (PMID: 18397895) Proc Natl Acad Sci U S A. 2012 Jun 5;109(23):8878-83. (PMID: 22615366) Sci Rep. 2015 Feb 05;5:8299. (PMID: 25654325) Ecol Evol. 2016 Jun 16;6(14):4775-91. (PMID: 27547312) Trends Ecol Evol. 2018 Mar;33(3):149-152. (PMID: 29454669) J Hered. 2019 Aug 16;110(5):559-576. (PMID: 31002340) BMC Biol. 2018 Jun 28;16(1):64. (PMID: 29950181) Proc Natl Acad Sci U S A. 2009 Jun 16;106 Suppl 1:9971-8. (PMID: 19528637) Nat Genet. 1997 Mar;15(3):311-5. (PMID: 9054949) PLoS One. 2014 Aug 29;9(8):e106264. (PMID: 25170923) Nat Ecol Evol. 2018 Sep;2(9):1479-1491. (PMID: 30082739) Trends Ecol Evol. 2020 Feb;35(2):125-136. (PMID: 31810775) C R Biol. 2011 Mar;334(3):171-81. (PMID: 21377611) Trends Genet. 2006 Mar;22(3):139-55. (PMID: 16458995) Mol Ecol. 2015 Mar;24(6):1205-17. (PMID: 25490862) Bioinformatics. 2010 Feb 1;26(3):419-20. (PMID: 20080509) PLoS One. 2011;6(6):e20642. (PMID: 21701575) Bioessays. 2009 Mar;31(3):349-60. (PMID: 19260016) Science. 2013 Nov 15;342(6160):871-4. (PMID: 24233726) Mol Ecol. 2009 Jun;18(12):2668-86. (PMID: 19457180) Nucleic Acids Res. 2004 Mar 19;32(5):1792-7. (PMID: 15034147) |
| معلومات مُعتمدة: | R35 GM144276 United States GM NIGMS NIH HHS; GM144276 United States NH NIH HHS; 538922 USDA Hatch Project; 21-44-04405 Russian Science Foundation |
| المشرفين على المادة: | 0 (DNA, Mitochondrial) |
| تواريخ الأحداث: | Date Created: 20240416 Date Completed: 20240710 Latest Revision: 20240712 |
| رمز التحديث: | 20240712 |
| مُعرف محوري في PubMed: | PMC11235124 |
| DOI: | 10.1093/jhered/esae022 |
| PMID: | 38624218 |
| قاعدة البيانات: | MEDLINE |
Full Text Finder | تدمد: | 1465-7333 |
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| DOI: | 10.1093/jhered/esae022 |