دورية أكاديمية
A reference quality genome assembly for the jewel scarab Chrysina gloriosa.
| العنوان: | A reference quality genome assembly for the jewel scarab Chrysina gloriosa. |
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| المؤلفون: | Sylvester T; Department of Biology, Texas A&M University, College Station, TX 77843, USA.; Department of Biology, University of Memphis, Memphis, TN 38111, USA., Hoover Z; Department of Biology, Texas A&M University, College Station, TX 77843, USA.; Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA., Hjelmen CE; Department of Biology, Texas A&M University, College Station, TX 77843, USA.; Department of Biology, Utah Valley University, Orem, UT 84058, USA., Jonika MM; Department of Biology, Texas A&M University, College Station, TX 77843, USA.; Interdisciplinary Program in Genetics and Genomics, Texas A&M University, College Station, TX 77843, USA., Blackmon LT; Department of Biology, Texas A&M University, College Station, TX 77843, USA., Alfieri JM; Interdisciplinary Program in Ecology and Evolutionary Biology, Texas A&M University, College Station, TX 77843, USA.; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Johnston JS; Department of Entomology, Texas A&M University, College Station, TX 77843, USA., Chien S; Department of Biology, Texas A&M University, College Station, TX 77843, USA., Esfandani T; Department of Biology, Texas A&M University, College Station, TX 77843, USA., Blackmon H; Department of Biology, Texas A&M University, College Station, TX 77843, USA.; Interdisciplinary Program in Genetics and Genomics, Texas A&M University, College Station, TX 77843, USA.; Interdisciplinary Program in Ecology and Evolutionary Biology, Texas A&M University, College Station, TX 77843, USA. |
| المصدر: | G3 (Bethesda, Md.) [G3 (Bethesda)] 2024 Jun 05; Vol. 14 (6). |
| نوع المنشور: | Journal Article |
| اللغة: | English |
| بيانات الدورية: | Publisher: Oxford University Press Country of Publication: England NLM ID: 101566598 Publication Model: Print Cited Medium: Internet ISSN: 2160-1836 (Electronic) Linking ISSN: 21601836 NLM ISO Abbreviation: G3 (Bethesda) Subsets: MEDLINE |
| أسماء مطبوعة: | Publication: 2021- : [Oxford] : Oxford University Press Original Publication: Bethesda, MD : Genetics Society of America, 2011- |
| مواضيع طبية MeSH: | Coleoptera*/genetics , Genome, Insect*, Animals ; Genomics/methods ; Molecular Sequence Annotation ; Female |
| مستخلص: | The jewel scarab Chrysina gloriosa is one of the most charismatic beetles in the United States and is found from the mountains of West Texas to the Southeastern Arizona sky islands. This species is highly sought by professional and amateur collectors worldwide due to its gleaming metallic coloration. However, the impact of the large-scale collection of this beetle on its populations is unknown, and there is a limited amount of genetic information available to make informed decisions about its conservation. As a first step, we present the genome of C. gloriosa, which we reconstructed using a single female specimen sampled from our ongoing effort to document population connectivity and the demographic history of this beetle. Using a combination of long-read sequencing and Omni-C data, we reconstructed the C. gloriosa genome at a near-chromosome level. Our genome assembly consisted of 454 scaffolds spanning 642 MB, with the 10 largest scaffolds capturing 98% of the genome. The scaffold N50 was 72 MB, and the BUSCO score was 95.5%. This genome assembly will be an essential tool to accelerate understanding C. gloriosa biology and help make informed decisions for the conservation of Chrysina and other species with similar distributions in this region. This genome assembly will further serve as a community resource for comparative genomic analysis. Competing Interests: Conflicts of interest The authors declare no conflict of interest. (© The Author(s) 2024. Published by Oxford University Press on behalf of The Genetics Society of America.) |
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| معلومات مُعتمدة: | R35 GM138098 United States GM NIGMS NIH HHS; NIH |
| فهرسة مساهمة: | Keywords: Coleoptera genomes; beetles; sex chromosomes; sky islands |
| تواريخ الأحداث: | Date Created: 20240417 Date Completed: 20240605 Latest Revision: 20240608 |
| رمز التحديث: | 20240608 |
| مُعرف محوري في PubMed: | PMC11152064 |
| DOI: | 10.1093/g3journal/jkae084 |
| PMID: | 38630623 |
| قاعدة البيانات: | MEDLINE |
Full Text Finder | تدمد: | 2160-1836 |
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| DOI: | 10.1093/g3journal/jkae084 |