دورية أكاديمية
Chloroplast genome analysis and evolutionary insights in the versatile medicinal plant Calendula officinalis L.
العنوان: | Chloroplast genome analysis and evolutionary insights in the versatile medicinal plant Calendula officinalis L. |
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المؤلفون: | Zhang N; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Huang K; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China. huangkerui@huas.edu.cn., Xie P; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Deng A; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Tang X; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Jiang M; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Mo P; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Yin H; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Huang R; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Liang J; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., He F; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Liu Y; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Hu H; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China. haolianghu6@126.com., Wang Y; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China. wy2015@huas.edu.cn. |
المصدر: | Scientific reports [Sci Rep] 2024 Apr 26; Vol. 14 (1), pp. 9662. Date of Electronic Publication: 2024 Apr 26. |
نوع المنشور: | Journal Article; Research Support, Non-U.S. Gov't |
اللغة: | English |
بيانات الدورية: | Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE |
أسماء مطبوعة: | Original Publication: London : Nature Publishing Group, copyright 2011- |
مواضيع طبية MeSH: | Genome, Chloroplast* , Plants, Medicinal*/genetics , Phylogeny* , Evolution, Molecular* , Calendula*/genetics, Codon Usage ; Base Composition ; Chloroplasts/genetics |
مستخلص: | Calendula officinalis L.is a versatile medicinal plant with numerous applications in various fields. However, its chloroplast genome structure, features, phylogeny, and patterns of evolution and mutation remain largely unexplored. This study examines the chloroplast genome, phylogeny, codon usage bias, and divergence time of C. officinalis, enhancing our understanding of its evolution and adaptation. The chloroplast genome of C. officinalis is a 150,465 bp circular molecule with a G + C content of 37.75% and comprises 131 genes. Phylogenetic analysis revealed a close relationship between C. officinalis, C. arvensis, and Osteospermum ecklonis. A key finding is the similarity in codon usage bias among these species, which, coupled with the divergence time analysis, supports their close phylogenetic proximity. This similarity in codon preference and divergence times underscores a parallel evolutionary adaptation journey for these species, highlighting the intricate interplay between genetic evolution and environmental adaptation in the Asteraceae family. Moreover unique evolutionary features in C. officinalis, possibly associated with certain genes were identified, laying a foundation for future research into the genetic diversity and medicinal value of C. officinalis. (© 2024. The Author(s).) |
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معلومات مُعتمدة: | 2023JJ30436 Natural Science Foundation of Hunan Province; 2022JJ50249 Natural Science Foundation of Hunan Province; 2022JJ40291 Natural Science Foundation of Hunan Province; E06022005 Key Research Project of Hunan University of Arts and Science; 22A0487 Scientific Research Foundation of Hunan Provincial Education Department; 21B0610 Scientific Research Youth Foundation of Education Department of Hunan Province |
فهرسة مساهمة: | Keywords: Calendula officinalis; Adaptation; Chloroplast genome; Codon usage bias; Evolution |
تواريخ الأحداث: | Date Created: 20240426 Date Completed: 20240426 Latest Revision: 20240429 |
رمز التحديث: | 20240430 |
مُعرف محوري في PubMed: | PMC11053094 |
DOI: | 10.1038/s41598-024-60455-2 |
PMID: | 38671173 |
قاعدة البيانات: | MEDLINE |
تدمد: | 2045-2322 |
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DOI: | 10.1038/s41598-024-60455-2 |