دورية أكاديمية
Chloroplast genome analysis and evolutionary insights in the versatile medicinal plant Calendula officinalis L.
| العنوان: | Chloroplast genome analysis and evolutionary insights in the versatile medicinal plant Calendula officinalis L. |
|---|---|
| المؤلفون: | Zhang N; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Huang K; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China. huangkerui@huas.edu.cn., Xie P; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Deng A; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Tang X; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Jiang M; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Mo P; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Yin H; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Huang R; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Liang J; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., He F; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Liu Y; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China., Hu H; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China. haolianghu6@126.com., Wang Y; Agricultural Products Processing and Food Safety Key Laboratory of Hunan Higher Education, Hunan Provincial Key Laboratory for Molecular Immunity Technology of Aquatic Animal Diseases, College of Life and Environmental Sciences, Hunan University of Arts and Science, Changde, Hunan, China. wy2015@huas.edu.cn. |
| المصدر: | Scientific reports [Sci Rep] 2024 Apr 26; Vol. 14 (1), pp. 9662. Date of Electronic Publication: 2024 Apr 26. |
| نوع المنشور: | Journal Article; Research Support, Non-U.S. Gov't |
| اللغة: | English |
| بيانات الدورية: | Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE |
| أسماء مطبوعة: | Original Publication: London : Nature Publishing Group, copyright 2011- |
| مواضيع طبية MeSH: | Genome, Chloroplast* , Plants, Medicinal*/genetics , Phylogeny* , Evolution, Molecular* , Calendula*/genetics, Codon Usage ; Base Composition ; Chloroplasts/genetics |
| مستخلص: | Calendula officinalis L.is a versatile medicinal plant with numerous applications in various fields. However, its chloroplast genome structure, features, phylogeny, and patterns of evolution and mutation remain largely unexplored. This study examines the chloroplast genome, phylogeny, codon usage bias, and divergence time of C. officinalis, enhancing our understanding of its evolution and adaptation. The chloroplast genome of C. officinalis is a 150,465 bp circular molecule with a G + C content of 37.75% and comprises 131 genes. Phylogenetic analysis revealed a close relationship between C. officinalis, C. arvensis, and Osteospermum ecklonis. A key finding is the similarity in codon usage bias among these species, which, coupled with the divergence time analysis, supports their close phylogenetic proximity. This similarity in codon preference and divergence times underscores a parallel evolutionary adaptation journey for these species, highlighting the intricate interplay between genetic evolution and environmental adaptation in the Asteraceae family. Moreover unique evolutionary features in C. officinalis, possibly associated with certain genes were identified, laying a foundation for future research into the genetic diversity and medicinal value of C. officinalis. (© 2024. The Author(s).) |
| References: | Nucleic Acids Res. 2019 Jul 2;47(W1):W5-W10. (PMID: 31062021) Plant Mol Biol. 1992 May;19(1):149-68. (PMID: 1600166) Genetics. 2008 Apr;178(4):2429-32. (PMID: 18430960) Genome. 2017 Jun;60(6):473-484. (PMID: 28177830) Gene. 2000 Dec 30;261(1):53-62. (PMID: 11164037) J Genet. 2005 Apr;84(1):55-62. (PMID: 15876584) Philos Trans R Soc Lond B Biol Sci. 2010 Apr 27;365(1544):1203-12. (PMID: 20308095) Nature. 2003 Apr 10;422(6932):633-7. (PMID: 12687005) Mol Biol Evol. 2015 Jan;32(1):268-74. (PMID: 25371430) BMC Plant Biol. 2023 Jan 14;23(1):32. (PMID: 36639619) Nat Plants. 2019 May;5(5):461-470. (PMID: 31061536) Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):E6117-E6125. (PMID: 27671647) PeerJ. 2020 Jan 6;8:e8251. (PMID: 31934501) Am Nat. 2017 Jun;189(6):684-699. (PMID: 28514635) Mol Cell. 2016 Feb 4;61(3):341-351. (PMID: 26849192) Genome Biol. 2020 Sep 10;21(1):241. (PMID: 32912315) Proc Natl Acad Sci U S A. 1999 Apr 13;96(8):4482-7. (PMID: 10200288) Mol Biol Evol. 2007 Jan;24(1):122-9. (PMID: 17021276) Zhongguo Zhong Yao Za Zhi. 2013 Mar;38(5):661-5. (PMID: 23724670) DNA Res. 2011 Dec;18(6):499-512. (PMID: 22039174) Syst Biol. 2017 May 01;66(3):338-351. (PMID: 27650175) BMC Genomics. 2007 Jun 15;8:174. (PMID: 17573971) Sci Rep. 2021 May 4;11(1):9471. (PMID: 33947883) BMC Evol Biol. 2014 Dec 17;14:262. (PMID: 25515024) Bioinformatics. 2018 Sep 1;34(17):i884-i890. (PMID: 30423086) Biochem Soc Trans. 1993 Nov;21(4):835-41. (PMID: 8132077) Front Genet. 2022 Apr 25;13:764534. (PMID: 35547259) Mol Biol Evol. 2005 Sep;22(9):1783-92. (PMID: 15917497) Biomed Res Int. 2022 Feb 24;2022:5364094. (PMID: 35252450) Nat Commun. 2018 Apr 20;9(1):1584. (PMID: 29679005) Nucleic Acids Res. 2019 Jul 2;47(W1):W65-W73. (PMID: 31066451) J Integr Plant Biol. 2021 Jul;63(7):1273-1293. (PMID: 33559953) Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):14083-14088. (PMID: 31209018) Mol Biol Evol. 2007 Mar;24(3):836-44. (PMID: 17204548) Bioinformatics. 2019 Dec 15;35(24):5321-5322. (PMID: 31292621) Genetics. 2004 Dec;168(4):2245-60. (PMID: 15611189) Plant J. 2011 Apr;66(1):34-44. (PMID: 21443621) BMC Evol Biol. 2004 Jun 28;4:19. (PMID: 15222899) J Integr Plant Biol. 2011 Apr;53(4):324-34. (PMID: 21332641) |
| معلومات مُعتمدة: | 2023JJ30436 Natural Science Foundation of Hunan Province; 2022JJ50249 Natural Science Foundation of Hunan Province; 2022JJ40291 Natural Science Foundation of Hunan Province; E06022005 Key Research Project of Hunan University of Arts and Science; 22A0487 Scientific Research Foundation of Hunan Provincial Education Department; 21B0610 Scientific Research Youth Foundation of Education Department of Hunan Province |
| فهرسة مساهمة: | Keywords: Calendula officinalis; Adaptation; Chloroplast genome; Codon usage bias; Evolution |
| تواريخ الأحداث: | Date Created: 20240426 Date Completed: 20240426 Latest Revision: 20240429 |
| رمز التحديث: | 20240430 |
| مُعرف محوري في PubMed: | PMC11053094 |
| DOI: | 10.1038/s41598-024-60455-2 |
| PMID: | 38671173 |
| قاعدة البيانات: | MEDLINE |
Find this article in full text from Springer Verlag. 
Full Text Finder | تدمد: | 2045-2322 |
|---|---|
| DOI: | 10.1038/s41598-024-60455-2 |