دورية أكاديمية
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Transcriptome Analysis Reveals a Diverse Range of Novel Viruses in Australian Sugarcane Soldier Fly ( Inopus flavus ) Larvae.

التفاصيل البيبلوغرافية
العنوان: Transcriptome Analysis Reveals a Diverse Range of Novel Viruses in Australian Sugarcane Soldier Fly ( Inopus flavus ) Larvae.
المؤلفون: Divekar G; School of Agriculture and Food Sustainability, The University of Queensland, Gatton 4343, Australia., Colmant AMG; Unité des Virus Émergents (UVE: Aix-Marseille Univ, Università di Corsica, IRD 190, Inserm 1207, IRBA), 13005 Marseille, France., Furlong MJ; School of the Environment, The University of Queensland, Brisbane 4072, Australia., Etebari K; School of Agriculture and Food Sustainability, The University of Queensland, Gatton 4343, Australia.
المصدر: Viruses [Viruses] 2024 Mar 27; Vol. 16 (4). Date of Electronic Publication: 2024 Mar 27.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101509722 Publication Model: Electronic Cited Medium: Internet ISSN: 1999-4915 (Electronic) Linking ISSN: 19994915 NLM ISO Abbreviation: Viruses Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Basel, Switzerland : MDPI
مواضيع طبية MeSH: Larva*/virology , Diptera*/virology , Phylogeny* , Saccharum*/virology , Gene Expression Profiling*, Animals ; Australia ; Transcriptome ; Insect Viruses/genetics ; Insect Viruses/classification ; Plant Viruses/genetics ; Plant Viruses/classification ; Genome, Viral
مستخلص: In Australia, Soldier flies ( Inopus spp.) are economically significant pests of sugarcane that currently lack a viable management strategy. Despite various research efforts, the mechanisms underlying the damage caused by soldier fly larvae remain poorly understood. Our study aims to explore whether this damage is associated with the transmission of plant viruses during larval feeding. We also explore the larval transcriptome to identify any entomopathogenic viruses with the potential to be used as biocontrol agents in future pest management programs. Seven novel virus sequences are identified and characterised using de novo assembly of RNA-Seq data obtained from salivary glands of larvae. The novel virus sequences belong to different virus families and are tentatively named SF-associated anphevirus (SFaAV), SF-associated orthomyxo-like virus (SFaOV), SF-associated narna-like virus (SFaNV), SF-associated partiti-like virus (SFaPV), SF-associated toti-like virus (SFaTV-1 and SFaTV-2) and SF-associated densovirus (SFaDV). These newly identified viruses are more likely insect-associated viruses, as phylogenetic analyses show that they cluster with other insect-specific viruses. Small RNA analysis indicates prominent peaks at both 21 nt and 26-29 nt, suggesting the activation of host siRNA and piwiRNA pathways. Our study helps to improve understanding of the virome of soldier flies and could identify insect viruses for deployment in novel pest management strategies.
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معلومات مُعتمدة: 2017/0050 Sugar Research Australia (Australia); 2022/016 Sugar Research Australia (Australia)
فهرسة مساهمة: Keywords: insect-specific viruses; next-generation sequencing; soldier fly virome; transcriptome analysis
تواريخ الأحداث: Date Created: 20240427 Date Completed: 20240427 Latest Revision: 20240522
رمز التحديث: 20240522
مُعرف محوري في PubMed: PMC11054854
DOI: 10.3390/v16040516
PMID: 38675859
قاعدة البيانات: MEDLINE
الوصف
تدمد:1999-4915
DOI:10.3390/v16040516