دورية أكاديمية
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Genome-wide identification of the plant homeodomain-finger family in rye and ScPHD5 functions in cold tolerance and flowering time.

التفاصيل البيبلوغرافية
العنوان: Genome-wide identification of the plant homeodomain-finger family in rye and ScPHD5 functions in cold tolerance and flowering time.
المؤلفون: Jung WJ; Institute of Animal Molecular Biotechnology, Korea University, Seoul, 02841, Korea., Jeong JH; Department of Plant Biotechnology, Korea University, Seoul, 02841, Korea., Yoon JS; Ojeong Plant Breeding Research Center, Korea University, Seoul, 02841, Korea., Seo YW; Department of Plant Biotechnology, Korea University, Seoul, 02841, Korea. seoag@korea.ac.kr.; Ojeong Plant Breeding Research Center, Korea University, Seoul, 02841, Korea. seoag@korea.ac.kr.
المصدر: Plant cell reports [Plant Cell Rep] 2024 May 15; Vol. 43 (6), pp. 142. Date of Electronic Publication: 2024 May 15.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Springer Country of Publication: Germany NLM ID: 9880970 Publication Model: Electronic Cited Medium: Internet ISSN: 1432-203X (Electronic) Linking ISSN: 07217714 NLM ISO Abbreviation: Plant Cell Rep Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Berlin ; New York : Springer, 1981-
مواضيع طبية MeSH: Gene Expression Regulation, Plant* , Flowers*/genetics , Flowers*/physiology , Plant Proteins*/genetics , Plant Proteins*/metabolism , Secale*/genetics , Secale*/physiology , Phylogeny*, Cold Temperature ; Plants, Genetically Modified/genetics ; Stress, Physiological/genetics ; Genome, Plant/genetics ; Multigene Family ; Homeodomain Proteins/genetics ; Homeodomain Proteins/metabolism ; PHD Zinc Fingers/genetics
مستخلص: Key Message: 111 PHD genes were newly identified in rye genome and ScPHD5's role in regulating cold tolerance and flowering time was suggested. Plant homeodomain (PHD)-finger proteins regulate the physical properties of chromatin and control plant development and stress tolerance. Although rye (Secale cereale L.) is a major winter crop, PHD-finger proteins in rye have not been studied. Here, we identified 111 PHD genes in the rye genome that exhibited diverse gene and protein sequence structures. Phylogenetic tree analysis revealed that PHDs were genetically close in monocots and diverged from those in dicots. Duplication and synteny analyses demonstrated that ScPHDs have undergone several duplications during evolution and that high synteny is conserved among the Triticeae species. Tissue-specific and abiotic stress-responsive gene expression analyses indicated that ScPHDs were highly expressed in spikelets and developing seeds and were responsive to cold and drought stress. One of these genes, ScPHD5, was selected for further functional characterization. ScPHD5 was highly expressed in the spike tissues and was localized in the nuclei of rye protoplasts and tobacco leaves. ScPHD5-overexpressing Brachypodium was more tolerant to freezing stress than wild-type (WT), with increased CBF and COR gene expression. Additionally, these transgenic plants displayed an extremely early flowering phenotype that flowered more than two weeks earlier than the WT, and vernalization genes, rather than photoperiod genes, were increased in the WT. RNA-seq analysis revealed that diverse stress response genes, including HSPs, HSFs, LEAs, and MADS-box genes, were also upregulated in transgenic plants. Our study will help elucidate the roles of PHD genes in plant development and abiotic stress tolerance in rye.
(© 2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
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معلومات مُعتمدة: 2021R1I1A1A01048945 National Research Foundation of Korea
فهرسة مساهمة: Keywords: Flowering; Freezing stress; MADS-box; Plant homeodomain-finger; Rye
تواريخ الأحداث: Date Created: 20240514 Date Completed: 20240514 Latest Revision: 20240716
رمز التحديث: 20240717
DOI: 10.1007/s00299-024-03226-7
PMID: 38744747
قاعدة البيانات: MEDLINE
الوصف
تدمد:1432-203X
DOI:10.1007/s00299-024-03226-7