دورية أكاديمية
أعرض في EDS

Systems for Targeted Silencing of Gene Expression and Their Application in Plants and Animals.

التفاصيل البيبلوغرافية
العنوان: Systems for Targeted Silencing of Gene Expression and Their Application in Plants and Animals.
المؤلفون: Motorina DM; Institute of Molecular and Cellular Biology, Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia., Galimova YA; Institute of Molecular and Cellular Biology, Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia., Battulina NV; Institute of Molecular and Cellular Biology, Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia., Omelina ES; Institute of Molecular and Cellular Biology, Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia.
المصدر: International journal of molecular sciences [Int J Mol Sci] 2024 May 11; Vol. 25 (10). Date of Electronic Publication: 2024 May 11.
نوع المنشور: Journal Article; Review
اللغة: English
بيانات الدورية: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Basel, Switzerland : MDPI, [2000-
مواضيع طبية MeSH: Plants*/genetics , Plants*/metabolism , Gene Silencing* , CRISPR-Cas Systems*, Animals ; RNA Interference ; Transcription Factors/genetics ; Transcription Factors/metabolism ; Optogenetics/methods ; Gene Expression Regulation ; Zinc Fingers/genetics
مستخلص: At present, there are a variety of different approaches to the targeted regulation of gene expression. However, most approaches are devoted to the activation of gene transcription, and the methods for gene silencing are much fewer in number. In this review, we describe the main systems used for the targeted suppression of gene expression (including RNA interference (RNAi), chimeric transcription factors, chimeric zinc finger proteins, transcription activator-like effectors (TALEs)-based repressors, optogenetic tools, and CRISPR/Cas-based repressors) and their application in eukaryotes-plants and animals. We consider the advantages and disadvantages of each approach, compare their effectiveness, and discuss the peculiarities of their usage in plant and animal organisms. This review will be useful for researchers in the field of gene transcription suppression and will allow them to choose the optimal method for suppressing the expression of the gene of interest depending on the research object.
References: Plant Cell Physiol. 2015 Mar;56(3):549-57. (PMID: 25520408)
Front Plant Sci. 2019 Mar 15;10:265. (PMID: 30930914)
Biol Rev Camb Philos Soc. 2017 Nov;92(4):1859-1876. (PMID: 28980433)
Neuron. 1999 Mar;22(3):451-61. (PMID: 10197526)
Nat Rev Mol Cell Biol. 2019 Aug;20(8):490-507. (PMID: 31147612)
Am J Med Genet A. 2019 Sep;179(9):1725-1744. (PMID: 31222966)
Proc Natl Acad Sci U S A. 2012 Nov 6;109(45):E3136-45. (PMID: 23054839)
Cell. 1988 Jan 29;52(2):169-78. (PMID: 2830022)
Methods Mol Biol. 2007;408:317-34. (PMID: 18314590)
Appl Biochem Biotechnol. 2016 Dec;180(8):1559-1573. (PMID: 27406037)
Plant Biotechnol J. 2015 May;13(4):578-89. (PMID: 25400128)
Annu Rev Biochem. 1998;67:227-64. (PMID: 9759489)
Int J Mol Sci. 2023 May 26;24(11):. (PMID: 37298295)
Nat Rev Cancer. 2005 Aug;5(8):603-14. (PMID: 16034366)
Nucleic Acids Res. 2002 Apr 1;30(7):1688-94. (PMID: 11917031)
Plant Biotechnol J. 2006 Jan;4(1):103-14. (PMID: 17177789)
Sci Rep. 2024 Mar 11;14(1):5893. (PMID: 38467687)
Sci Transl Med. 2021 Mar 10;13(584):. (PMID: 33692134)
MicroPubl Biol. 2023 Mar 23;2023:. (PMID: 37033706)
Plant J. 2003 Apr;34(2):241-7. (PMID: 12694598)
New Phytol. 2021 Jul;231(1):54-59. (PMID: 33774815)
Cell. 2017 Jan 12;168(1-2):150-158.e10. (PMID: 28041849)
Plant Cell. 2022 Aug 25;34(9):3183-3199. (PMID: 35666177)
EMBO J. 1996 Aug 1;15(15):3951-63. (PMID: 8670900)
Sci Rep. 2014 Dec 05;4:7338. (PMID: 25475013)
Plant J. 2000 Apr;22(1):19-27. (PMID: 10792817)
Nat Neurosci. 2006 May;9(5):703-9. (PMID: 16582903)
Nat Methods. 2019 Sep;16(9):866-869. (PMID: 31451765)
Proc Natl Acad Sci U S A. 1997 May 27;94(11):5525-30. (PMID: 9159105)
Nat Methods. 2012 Feb 19;9(4):363-6. (PMID: 22343343)
Cell. 2015 Oct 22;163(3):759-71. (PMID: 26422227)
Nat Plants. 2017 Jan 09;3:16207. (PMID: 28067898)
Mol Cell. 2019 Feb 07;73(3):589-600.e4. (PMID: 30639240)
Plant Mol Biol. 2012 Feb;78(3):311-21. (PMID: 22167390)
Nat Chem Biol. 2014 Mar;10(3):196-202. (PMID: 24413462)
Front Plant Sci. 2021 Jul 09;12:655127. (PMID: 34305962)
Plant Methods. 2011 Jun 10;7(1):15. (PMID: 21658286)
Nat Protoc. 2009;4(10):1471-501. (PMID: 19798082)
Plant Biotechnol J. 2016 Oct;14(10):1956-75. (PMID: 26923339)
Nat Plants. 2017 Feb 17;3:17018. (PMID: 28211909)
Front Bioeng Biotechnol. 2022 Aug 08;10:963026. (PMID: 36003536)
PeerJ. 2017 Dec 14;5:e4167. (PMID: 29259847)
PLoS Pathog. 2016 Oct 13;12(10):e1005901. (PMID: 27737019)
Dev Growth Differ. 2021 Apr;63(3):189-198. (PMID: 33733477)
Cell. 1987 Jul 3;50(1):137-42. (PMID: 3297349)
Cell Microbiol. 2021 Dec;23(12):e13387. (PMID: 34418264)
Plant Cell. 2007 Nov;19(11):3379-90. (PMID: 18055602)
Proc Natl Acad Sci U S A. 2000 Feb 15;97(4):1495-500. (PMID: 10660690)
Nat Biotechnol. 2002 Feb;20(2):135-41. (PMID: 11821858)
Nucleic Acids Res. 2007;35(1):100-12. (PMID: 17151075)
Genome Biol. 2022 Jan 03;23(1):6. (PMID: 34980227)
Int J Mol Sci. 2022 Feb 03;23(3):. (PMID: 35163658)
Curr Biol. 2002 Dec 23;12(24):2159-66. (PMID: 12498693)
Plant Biotechnol J. 2022 Feb;20(2):399-408. (PMID: 34632687)
Epigenetics. 2012 Apr;7(4):350-60. (PMID: 22419067)
Nat Biotechnol. 2003 Jun;21(6):635-7. (PMID: 12754523)
Mol Cell Biol. 1995 Apr;15(4):1907-14. (PMID: 7891684)
Plant J. 2006 Feb;45(3):399-422. (PMID: 16412086)
Nat Commun. 2018 Apr 26;9(1):1674. (PMID: 29700298)
Nature. 2001 May 24;411(6836):494-8. (PMID: 11373684)
Front Plant Sci. 2021 May 28;12:667319. (PMID: 34127927)
Methods Mol Biol. 2011;754:87-105. (PMID: 21720948)
EMBO J. 2005 May 18;24(10):1874-85. (PMID: 15889151)
FEBS Lett. 2011 Aug 4;585(15):2488-92. (PMID: 21741974)
Plant Mol Biol. 2002 Jun-Jul;49(3-4):387-400. (PMID: 12036262)
Int J Mol Sci. 2019 Mar 29;20(7):. (PMID: 30934883)
Cell. 2018 Mar 8;172(6):1239-1259. (PMID: 29522745)
Chem Rev. 2017 May 10;117(9):6423-6446. (PMID: 28401765)
Nucleic Acids Res. 2022 Jun 24;50(11):6562-6574. (PMID: 35670660)
Gene. 2023 Jan 30;851:146967. (PMID: 36261092)
EMBO J. 2023 Feb 1;42(3):e112100. (PMID: 36545802)
Proc Natl Acad Sci U S A. 2006 Sep 26;103(39):14302-6. (PMID: 16985000)
FASEB J. 2011 Aug;25(8):2638-49. (PMID: 21518849)
iScience. 2019 Sep 27;19:492-503. (PMID: 31437752)
Int J Mol Sci. 2023 Jun 05;24(11):. (PMID: 37298705)
PLoS Pathog. 2012 Sep;8(9):e1002941. (PMID: 23028332)
Ann Bot. 2007 Sep;100(3):641-9. (PMID: 17616562)
Nat Med. 2003 Mar;9(3):347-51. (PMID: 12579197)
BMC Genomics. 2018 Aug 9;19(1):599. (PMID: 30092779)
Arch Dis Child Educ Pract Ed. 2016 Aug;101(4):213-5. (PMID: 27059283)
New Phytol. 2017 Sep;215(4):1462-1475. (PMID: 28700082)
Adv Protein Chem Struct Biol. 2014;94:347-64. (PMID: 24629191)
Mol Ther. 2008 Sep;16(9):1630-6. (PMID: 18665161)
Plant Biotechnol J. 2022 May;20(5):809-811. (PMID: 35301818)
mSphere. 2023 Feb 21;8(1):e0059422. (PMID: 36655998)
Curr Opin Pharmacol. 2020 Oct;54:121-129. (PMID: 33171339)
Appl Microbiol Biotechnol. 2019 Feb;103(4):1789-1799. (PMID: 30613898)
Int J Mol Sci. 2023 Mar 15;24(6):. (PMID: 36982682)
Nat Methods. 2011 Jan;8(1):26-9. (PMID: 21191368)
J Neurosci. 2011 Jul 27;31(30):10829-35. (PMID: 21795535)
Nat Commun. 2015 Feb 25;6:6267. (PMID: 25711368)
Nat Commun. 2017 Nov 13;8(1):1450. (PMID: 29133799)
Methods Mol Biol. 2022;2379:99-111. (PMID: 35188658)
Int J Mol Sci. 2021 Nov 10;22(22):. (PMID: 34830030)
Plant Physiol. 2020 Jan;182(1):38-50. (PMID: 31285292)
Nat Commun. 2012 Jul 24;3:968. (PMID: 22828628)
Annu Rev Immunol. 1998;16:569-92. (PMID: 9597142)
Elife. 2020 Dec 16;9:. (PMID: 33325823)
Oncogene. 2020 Feb;39(6):1167-1184. (PMID: 31636382)
Trends Biochem Sci. 2003 Apr;28(4):196-201. (PMID: 12713903)
Proc Natl Acad Sci U S A. 2003 May 27;100(11):6347-52. (PMID: 12746500)
Mob DNA. 2015 Oct 02;6:17. (PMID: 26435754)
EMBO J. 2002 Nov 1;21(21):5864-74. (PMID: 12411504)
Proc Natl Acad Sci U S A. 1995 Feb 28;92(5):1679-83. (PMID: 7878039)
Development. 2009 May;136(9):1509-17. (PMID: 19363152)
3 Biotech. 2019 Mar;9(3):112. (PMID: 30863696)
Mol Plant Pathol. 2018 Apr;19(4):883-895. (PMID: 28621835)
Methods Mol Biol. 2007;397:161-201. (PMID: 18025721)
Int J Mol Sci. 2019 May 08;20(9):. (PMID: 31072065)
Gene. 2000 Jul 11;252(1-2):95-105. (PMID: 10903441)
Nucleic Acids Res. 2003 Nov 1;31(21):e127. (PMID: 14576327)
Front Plant Sci. 2020 Jun 25;11:946. (PMID: 32670336)
Mol Plant Microbe Interact. 2005 Aug;18(8):838-48. (PMID: 16134896)
Nature. 2003 Jan 16;421(6920):231-7. (PMID: 12529635)
J Biol Chem. 2000 May 5;275(18):13493-501. (PMID: 10788463)
Annu Rev Biochem. 2015;84:519-50. (PMID: 25706899)
Int J Mol Sci. 2022 Jun 14;23(12):. (PMID: 35743077)
Proc Natl Acad Sci U S A. 1992 Jun 15;89(12):5547-51. (PMID: 1319065)
Microbiol Mol Biol Rev. 2003 Dec;67(4):657-85. (PMID: 14665679)
Insects. 2020 Aug 20;11(9):. (PMID: 32825516)
Nucleic Acids Res. 2016 May 19;44(9):e84. (PMID: 26850642)
Mol Cell Biol. 1989 Jul;9(7):3009-17. (PMID: 2506435)
Nat Rev Mol Cell Biol. 2005 Feb;6(2):127-38. (PMID: 15654322)
Plant Cell Physiol. 2005 Jan;46(1):147-55. (PMID: 15668208)
Sci Rep. 2012;2:897. (PMID: 23193439)
Cell. 2013 Feb 28;152(5):1173-83. (PMID: 23452860)
Nature. 2014 Mar 6;507(7490):124-128. (PMID: 24463519)
Plant Mol Biol. 2016 Feb;90(3):281-92. (PMID: 26659592)
Nat Cell Biol. 2012 Feb 19;14(3):318-28. (PMID: 22344029)
Biochem Biophys Res Commun. 2007 Aug 24;360(2):496-500. (PMID: 17604000)
Genesis. 2004 Aug;39(4):240-5. (PMID: 15286996)
Cell. 2021 Apr 29;184(9):2503-2519.e17. (PMID: 33838111)
Nucleic Acids Res. 2017 Feb 28;45(4):1703-1713. (PMID: 27899645)
Plant Biotechnol J. 2017 Mar;15(3):344-356. (PMID: 27565765)
Plant Methods. 2020 Oct 02;16:133. (PMID: 33024447)
Nat Commun. 2021 Jan 27;12(1):615. (PMID: 33504786)
Mol Ther. 2008 Mar;16(3):557-564. (PMID: 28178502)
Nat Chem Biol. 2017 Jun;13(6):633-639. (PMID: 28346403)
Nat Rev Drug Discov. 2019 Jun;18(6):421-446. (PMID: 30846871)
Nat Plants. 2016 Sep 19;2:16151. (PMID: 27643635)
Curr Opin Immunol. 2015 Feb;32:36-41. (PMID: 25574773)
Cell. 2013 Jul 18;154(2):442-51. (PMID: 23849981)
Science. 2003 Dec 5;302(5651):1765-8. (PMID: 14657498)
Plant Cell Physiol. 2009 May;50(5):970-5. (PMID: 19324928)
Biotechniques. 2020 May;68(5):283-290. (PMID: 32202134)
Front Microbiol. 2020 Apr 28;11:754. (PMID: 32411110)
ACS Chem Biol. 2014 Jan 17;9(1):111-5. (PMID: 24180414)
J Biol Chem. 2011 Jan 14;286(2):1659-68. (PMID: 21059647)
Cell. 1988 Jan 29;52(2):161-7. (PMID: 2830021)
Pest Manag Sci. 2021 May;77(5):2188-2196. (PMID: 33099867)
Plant J. 2008 Sep;55(6):954-67. (PMID: 18532977)
Nat Med. 2019 Jul;25(7):1131-1142. (PMID: 31263285)
Plant J. 2003 Jun;34(5):733-9. (PMID: 12787253)
Biochem Biophys Res Commun. 2014 Jan 24;443(4):1189-94. (PMID: 24380858)
Sci STKE. 2004 Feb 12;2004(220):pl6. (PMID: 14970377)
Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):13296-301. (PMID: 12271125)
Plants (Basel). 2021 May 12;10(5):. (PMID: 34066062)
Int J Mol Sci. 2021 Jun 23;22(13):. (PMID: 34201713)
Synth Syst Biotechnol. 2017 Sep 08;2(3):219-225. (PMID: 29318202)
Mol Cells. 2006 Feb 28;21(1):153-60. (PMID: 16511359)
Development. 1993 Jun;118(2):401-15. (PMID: 8223268)
Curr Top Microbiol Immunol. 2013;371:153-81. (PMID: 23686235)
Science. 2012 Aug 17;337(6096):816-21. (PMID: 22745249)
Plant Cell. 1990 Apr;2(4):279-289. (PMID: 12354959)
Trends Biochem Sci. 2008 May;33(5):220-9. (PMID: 18406148)
BMC Bioinformatics. 2010 Nov 02;11:543. (PMID: 21044337)
Proc Natl Acad Sci U S A. 2000 Jun 6;97(12):6499-503. (PMID: 10823906)
Nucleic Acids Res. 2012 Aug;40(15):7584-95. (PMID: 22581776)
PLoS One. 2020 Aug 3;15(8):e0237176. (PMID: 32745128)
J Cell Sci. 2001 Sep;114(Pt 17):3083-91. (PMID: 11590235)
Trends Plant Sci. 2011 Oct;16(10):541-9. (PMID: 21723179)
Plant Cell Environ. 2022 Feb;45(2):347-361. (PMID: 34799858)
Cell. 2014 Oct 23;159(3):647-61. (PMID: 25307932)
Science. 2008 Mar 7;319(5868):1384-6. (PMID: 18258861)
Genes Dev. 2003 Dec 15;17(24):3011-6. (PMID: 14681208)
J Exp Bot. 2019 Feb 5;70(3):757-770. (PMID: 30452695)
Genetics. 2015 Oct;201(2):433-42. (PMID: 26245833)
Nature. 2005 May 26;435(7041):441-5. (PMID: 15917797)
Nature. 2015 Mar 12;519(7542):199-202. (PMID: 25707807)
Neurol Res Int. 2012;2012:595410. (PMID: 22272373)
Front Plant Sci. 2020 Apr 29;11:476. (PMID: 32411160)
Prog Mol Biol Transl Sci. 2017;149:111-132. (PMID: 28712493)
Genome Biol. 2016 Mar 08;17:45. (PMID: 26956608)
J Biol Chem. 2009 Jul 3;284(27):17897-901. (PMID: 19342379)
Cell. 2016 May 05;165(4):949-62. (PMID: 27114038)
Methods Mol Biol. 2017;1629:167-184. (PMID: 28623586)
Plant Biotechnol J. 2015 Sep;13(7):875-83. (PMID: 25487781)
Science. 2002 Apr 19;296(5567):550-3. (PMID: 11910072)
Plants (Basel). 2020 May 26;9(6):. (PMID: 32466487)
J Vis Exp. 2021 Apr 15;(170):. (PMID: 33938894)
BMC Plant Biol. 2010 Oct 12;10:220. (PMID: 20939918)
Elife. 2022 Apr 01;11:. (PMID: 35363137)
Plants (Basel). 2021 Sep 29;10(10):. (PMID: 34685863)
Plant Cell. 2008 Apr;20(4):920-33. (PMID: 18408069)
Trends Plant Sci. 2010 Jan;15(1):1-4. (PMID: 19819180)
Mol Cell. 2022 Jan 6;82(1):30-43. (PMID: 34942118)
Cell. 2012 Jun 22;149(7):1447-60. (PMID: 22704655)
FEBS Lett. 2000 Aug 18;479(3):79-82. (PMID: 10981711)
Dev Biol. 2024 May;509:59-69. (PMID: 38373693)
Genes Dev. 2014 Sep 1;28(17):1859-72. (PMID: 25184674)
Plant Biotechnol (Tokyo). 2017;34(3):151-158. (PMID: 31275021)
Mol Cell. 2023 Nov 16;83(22):3972-3999. (PMID: 37922911)
Genesis. 2002 Sep-Oct;34(1-2):1-15. (PMID: 12324939)
Plant Methods. 2008 Jan 22;4:5. (PMID: 18211705)
Plant Physiol. 2020 Sep;184(1):65-81. (PMID: 32651189)
Plants (Basel). 2013 Dec 05;2(4):769-85. (PMID: 27137403)
Nature. 2013 Aug 22;500(7463):472-476. (PMID: 23877069)
Proc Natl Acad Sci U S A. 1998 Dec 8;95(25):14628-33. (PMID: 9843940)
J Mol Biol. 2013 Feb 8;425(3):479-91. (PMID: 23220192)
PLoS Genet. 2009 Jan;5(1):e1000325. (PMID: 19119423)
Nucleic Acids Res. 2022 Mar 21;50(5):2854-2871. (PMID: 35166844)
Proc Natl Acad Sci U S A. 2004 Feb 17;101(7):1927-32. (PMID: 14762164)
Sci Rep. 2018 May 9;8(1):7320. (PMID: 29743510)
Oncogene. 2002 Aug 22;21(37):5716-24. (PMID: 12173041)
Commun Biol. 2020 Oct 9;3(1):561. (PMID: 33037315)
G3 (Bethesda). 2022 Jan 4;12(1):. (PMID: 34849776)
PLoS Biol. 2017 Nov 30;15(11):e2003213. (PMID: 29190685)
Nat Methods. 2020 Jul;17(7):717-725. (PMID: 32601426)
Genes Dev. 2002 Apr 15;16(8):948-58. (PMID: 11959843)
معلومات مُعتمدة: 22-74-10118 Russian science foundation
فهرسة مساهمة: Keywords: CRISPR/Cas; RNAi; TALE; gene silencing; optogenetics; zinc finger protein
المشرفين على المادة: 0 (Transcription Factors)
تواريخ الأحداث: Date Created: 20240525 Date Completed: 20240525 Latest Revision: 20240528
رمز التحديث: 20240528
مُعرف محوري في PubMed: PMC11121118
DOI: 10.3390/ijms25105231
PMID: 38791270
قاعدة البيانات: MEDLINE
الوصف
تدمد:1422-0067
DOI:10.3390/ijms25105231