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A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics.

التفاصيل البيبلوغرافية
العنوان: A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics.
المؤلفون: Eloe-Fadrosh EA; Environmental Genomics and System Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. eaeloefadrosh@lbl.gov., Mungall CJ; Environmental Genomics and System Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Miller MA; Environmental Genomics and System Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Smith M; Pacific Northwest National Laboratory, Richland, WA, USA., Patil SS; Environmental Genomics and System Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Kelliher JM; Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA., Johnson LYD; Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA., Rodriguez FE; Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA., Chain PSG; Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA., Hu B; Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA., Thornton MB; Environmental Genomics and System Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., McCue LA; Pacific Northwest National Laboratory, Richland, WA, USA., McHardy AC; Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany., Harris NL; Environmental Genomics and System Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Reddy TBK; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Mukherjee S; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Hunter CI; GigaScience Press, Hong Kong Science Park, Pak Shek Kok, New Territories, Hong Kong., Walls R; Critical Path Institute, Tucson, AZ, USA., Schriml LM; University of Maryland School of Medicine, Institute for Genome Sciences, Baltimore, MD, USA.
المصدر: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2024; Vol. 2802, pp. 587-609.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029 (Electronic) Linking ISSN: 10643745 NLM ISO Abbreviation: Methods Mol Biol Subsets: MEDLINE
أسماء مطبوعة: Publication: Totowa, NJ : Humana Press
Original Publication: Clifton, N.J. : Humana Press,
مواضيع طبية MeSH: Metagenomics*/methods , Metagenomics*/standards , Genomics*/methods , Genomics*/standards , Metagenome*/genetics, Databases, Genetic ; Soil Microbiology
مستخلص: Comparative analysis of (meta)genomes necessitates aggregation, integration, and synthesis of well-annotated data using standards. The Genomic Standards Consortium (GSC) collaborates with the research community to develop and maintain the Minimum Information about any (x) Sequence (MIxS) reporting standard for genomic data. To facilitate the use of the GSC's MIxS reporting standard, we provide a description of the structure and terminology, how to navigate ontologies for required terms in MIxS, and demonstrate practical usage through a soil metagenome example.
(© 2024. The Author(s).)
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فهرسة مساهمة: Keywords: Genome; Metadata; Metagenome; Schema; Validation; Standards
تواريخ الأحداث: Date Created: 20240531 Date Completed: 20240531 Latest Revision: 20240531
رمز التحديث: 20240531
DOI: 10.1007/978-1-0716-3838-5_20
PMID: 38819573
قاعدة البيانات: MEDLINE
الوصف
تدمد:1940-6029
DOI:10.1007/978-1-0716-3838-5_20