دورية أكاديمية
أعرض في EDS

Assessing the biodiversity of rhizosphere and endophytic fungi in Knoxia valerianoides under continuous cropping conditions.

التفاصيل البيبلوغرافية
العنوان: Assessing the biodiversity of rhizosphere and endophytic fungi in Knoxia valerianoides under continuous cropping conditions.
المؤلفون: Liu C; College of Plant Protection, Yunnan Agricultural University, Kunming, 650201, China., Zhang L; Institute of Medicinal Plant Cultivation, School of Chinese Materia Medica, Academy of Southern Medicine, Yunnan University of Chinese Medicine, Kunming, 650500, China., Li H; R&D center of Yunnan Yuntianhua Co., Ltd, Kunming, 650228, China., He X; Southwest Forestry University, Kunming, 650244, China. 57104556@qq.com., Dong J; Institute of Medicinal Plant Cultivation, School of Chinese Materia Medica, Academy of Southern Medicine, Yunnan University of Chinese Medicine, Kunming, 650500, China. dongjhn@126.com., Qiu B; Institute of Medicinal Plant Cultivation, School of Chinese Materia Medica, Academy of Southern Medicine, Yunnan University of Chinese Medicine, Kunming, 650500, China. yyqiubin@aliyun.com.
المصدر: BMC microbiology [BMC Microbiol] 2024 Jun 07; Vol. 24 (1), pp. 195. Date of Electronic Publication: 2024 Jun 07.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: BioMed Central Country of Publication: England NLM ID: 100966981 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2180 (Electronic) Linking ISSN: 14712180 NLM ISO Abbreviation: BMC Microbiol Subsets: MEDLINE
أسماء مطبوعة: Original Publication: London : BioMed Central, [2001-
مواضيع طبية MeSH: Rhizosphere* , Endophytes*/classification , Endophytes*/genetics , Endophytes*/isolation & purification , Soil Microbiology* , Biodiversity* , Fungi*/classification , Fungi*/genetics , Fungi*/isolation & purification , Plant Roots*/microbiology, DNA, Fungal/genetics ; High-Throughput Nucleotide Sequencing ; Plant Diseases/microbiology ; Ascomycota/genetics ; Ascomycota/classification ; Ascomycota/growth & development ; Ascomycota/isolation & purification ; Phylogeny ; Mycobiome
مستخلص: Background: Rhizosphere and endophytic fungi play important roles in plant health and crop productivity. However, their community dynamics during the continuous cropping of Knoxia valerianoides have rarely been reported. K. valerianoides is a perennial herb of the family Rubiaceae and has been used in herbal medicines for ages. Here, we used high-throughput sequencing technology Illumina MiSeq to study the structural and functional dynamics of the rhizosphere and endophytic fungi of K. valerianoides.
Results: The findings indicate that continuous planting has led to an increase in the richness and diversity of rhizosphere fungi, while concomitantly resulting in a decrease in the richness and diversity of root fungi. The diversity of endophytic fungal communities in roots was lower than that of the rhizosphere fungi. Ascomycota and Basidiomycota were the dominant phyla detected during the continuous cropping of K. valerianoides. In addition, we found that root rot directly affected the structure and diversity of fungal communities in the rhizosphere and the roots of K. valerianoides. Consequently, both the rhizosphere and endophyte fungal communities of root rot-infected plants showed higher richness than the healthy plants. The relative abundance of Fusarium in two and three years old root rot-infected plants was significantly higher than the control, indicating that continuous planting negatively affected the health of K. valerianoides plants. Decision Curve Analysis showed that soil pH, organic matter (OM), available K, total K, soil sucrase (S_SC), soil catalase (S_CAT), and soil cellulase (S_CL) were significantly related (p < 0.05) to the fungal community dynamics.
Conclusions: The diversity of fungal species in the rhizosphere and root of K. valerianoides was reported for the first time. The fungal diversity of rhizosphere soil was higher than that of root endophytic fungi. The fungal diversity of root rot plants was higher than that of healthy plants. Soil pH, OM, available K, total K, S_CAT, S_SC, and S_CL were significantly related to the fungal diversity. The occurrence of root rot had an effect on the community structure and diversity of rhizosphere and root endophytic fungi.
(© 2024. The Author(s).)
References: Sci Rep. 2020 Apr 29;10(1):7198. (PMID: 32350351)
Zhongguo Zhong Yao Za Zhi. 2018 May;43(10):2038-2047. (PMID: 29933668)
Nat Rev Microbiol. 2010 Nov;8(11):779-90. (PMID: 20948551)
Front Microbiol. 2022 Oct 26;13:981615. (PMID: 36386686)
Nat Methods. 2013 Oct;10(10):996-8. (PMID: 23955772)
Front Microbiol. 2022 Feb 24;13:791603. (PMID: 35283855)
Front Microbiol. 2022 Mar 16;13:801546. (PMID: 35369487)
Curr Microbiol. 2020 Oct;77(10):2745-2750. (PMID: 32506240)
J Basic Microbiol. 2017 Apr;57(4):337-344. (PMID: 28060404)
Sci Rep. 2017 Mar 23;7(1):343. (PMID: 28336973)
J Ginseng Res. 2021 Jan;45(1):156-162. (PMID: 33437167)
Zhongguo Zhong Yao Za Zhi. 2009 Dec;34(24):3184-7. (PMID: 20352995)
Curr Opin Microbiol. 2022 Oct;69:102177. (PMID: 35870225)
Zhongguo Zhong Yao Za Zhi. 2017 Feb;42(3):443-449. (PMID: 28952247)
Nat Rev Microbiol. 2013 Nov;11(11):789-99. (PMID: 24056930)
Front Microbiol. 2021 Jun 25;12:676880. (PMID: 34248889)
Sci Rep. 2018 Apr 17;8(1):6116. (PMID: 29666454)
Ecotoxicology. 2022 Nov;31(9):1356-1368. (PMID: 36208367)
Zhongguo Zhong Yao Za Zhi. 2020 Feb;45(3):463-471. (PMID: 32237501)
Sci Total Environ. 2022 Aug 20;835:155534. (PMID: 35489484)
PeerJ. 2020 Apr 6;8:e8905. (PMID: 32292655)
Appl Environ Microbiol. 2009 Dec;75(23):7537-41. (PMID: 19801464)
Zhongguo Zhong Yao Za Zhi. 2013 Dec;38(24):4252-6. (PMID: 24791525)
FEMS Microbiol Rev. 2013 Sep;37(5):634-63. (PMID: 23790204)
Plants (Basel). 2020 Feb 13;9(2):. (PMID: 32070003)
J Hazard Mater. 2021 Jul 15;414:125521. (PMID: 34030405)
Bioinformatics. 2018 Sep 1;34(17):i884-i890. (PMID: 30423086)
ISME J. 2013 Jul;7(7):1262-73. (PMID: 23426013)
Front Plant Sci. 2019 Oct 17;10:1120. (PMID: 31681341)
Mycologia. 2006 Nov-Dec;98(6):1088-103. (PMID: 17486983)
Sci Rep. 2022 Oct 17;12(1):17390. (PMID: 36253456)
J Ginseng Res. 2016 Apr;40(2):127-34. (PMID: 27158233)
Plant Physiol. 2014 Oct;166(2):689-700. (PMID: 25059708)
Mol Plant Pathol. 2013 May;14(4):323-41. (PMID: 23279114)
Chin Med. 2020 Aug 10;15:85. (PMID: 32793300)
Microbiol Res. 2017 Jan;194:10-19. (PMID: 27938858)
Bioinformatics. 2011 Nov 1;27(21):2957-63. (PMID: 21903629)
Appl Microbiol Biotechnol. 2019 Apr;103(8):3327-3340. (PMID: 30847542)
3 Biotech. 2021 May;11(5):210. (PMID: 33927998)
3 Biotech. 2021 Nov;11(11):469. (PMID: 34745820)
Molecules. 2022 Sep 29;27(19):. (PMID: 36234972)
Antonie Van Leeuwenhoek. 2015 Nov;108(5):1059-74. (PMID: 26296378)
J Chem Ecol. 2012 Aug;38(8):975-83. (PMID: 22752368)
Appl Environ Microbiol. 2009 Aug;75(15):5111-20. (PMID: 19502440)
Front Microbiol. 2016 Jun 09;7:906. (PMID: 27375610)
Front Microbiol. 2021 Jan 07;11:614620. (PMID: 33488557)
Ying Yong Sheng Tai Xue Bao. 2010 Jul;21(7):1766-71. (PMID: 20879535)
Front Microbiol. 2022 Feb 03;13:833758. (PMID: 35185852)
Ying Yong Sheng Tai Xue Bao. 2015 Jan;26(1):113-21. (PMID: 25985661)
J Asian Nat Prod Res. 2011 Oct;13(11):1023-9. (PMID: 22007602)
BMC Plant Biol. 2012 Sep 17;12:168. (PMID: 22984782)
معلومات مُعتمدة: 202102AA310037; 202102AA310045-04 the major science and technology special program of Yunnan Province; 202001AZ070001-015 Yunnan Provincial Science and Technology Department Applied Basic Research Joint Special Funds of Chinese Medicine
فهرسة مساهمة: Keywords: Knoxia valerianoides; Continuous cropping; Endophytic fungi; Physico-chemical properties; Rhizosphere fungi
المشرفين على المادة: 0 (DNA, Fungal)
تواريخ الأحداث: Date Created: 20240607 Date Completed: 20240607 Latest Revision: 20240610
رمز التحديث: 20240610
مُعرف محوري في PubMed: PMC11157913
DOI: 10.1186/s12866-024-03357-7
PMID: 38849736
قاعدة البيانات: MEDLINE
الوصف
تدمد:1471-2180
DOI:10.1186/s12866-024-03357-7