دورية أكاديمية

Biosynthesis of GMGT lipids by a radical SAM enzyme associated with anaerobic archaea and oxygen-deficient environments.

التفاصيل البيبلوغرافية
العنوان: Biosynthesis of GMGT lipids by a radical SAM enzyme associated with anaerobic archaea and oxygen-deficient environments.
المؤلفون: Li Y; Department of Ocean Science and Engineering, Southern University of Science and Technology, Shenzhen, China.; Department of Chemistry, Southern University of Science and Technology, Shenzhen, China., Yu T; Department of Systems Biology and Institute for Biological Electron Microscopy, Southern University of Science and Technology, Shenzhen, China., Feng X; Department of Ocean Science and Engineering, Southern University of Science and Technology, Shenzhen, China., Zhao B; Department of Ocean Science and Engineering, Southern University of Science and Technology, Shenzhen, China., Chen H; Department of Ocean Science and Engineering, Southern University of Science and Technology, Shenzhen, China., Yang H; State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, China., Chen X; Frontiers Science Center for Deep Ocean Multispheres and Earth System, College of Marine Life Sciences, Ocean University of China, Qingdao, China., Zhang XH; Frontiers Science Center for Deep Ocean Multispheres and Earth System, College of Marine Life Sciences, Ocean University of China, Qingdao, China., Anderson HR; Department of Chemistry, Stanford University, Stanford, USA., Burns NZ; Department of Chemistry, Stanford University, Stanford, USA., Zeng F; Department of Systems Biology and Institute for Biological Electron Microscopy, Southern University of Science and Technology, Shenzhen, China. zengfx@sustech.edu.cn., Tao L; Department of Chemistry, Southern University of Science and Technology, Shenzhen, China. taolz@sustech.edu.cn., Zeng Z; Department of Ocean Science and Engineering, Southern University of Science and Technology, Shenzhen, China. zengzr@sustech.edu.cn.
المصدر: Nature communications [Nat Commun] 2024 Jun 19; Vol. 15 (1), pp. 5256. Date of Electronic Publication: 2024 Jun 19.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
أسماء مطبوعة: Original Publication: [London] : Nature Pub. Group
مواضيع طبية MeSH: S-Adenosylmethionine*/metabolism , Archaea*/genetics , Archaea*/metabolism , Archaea*/enzymology , Oxygen*/metabolism, Anaerobiosis ; Archaeal Proteins/metabolism ; Archaeal Proteins/genetics ; Glycerol/metabolism ; Metagenome ; Phylogeny
مستخلص: Archaea possess characteristic membrane-spanning lipids that are thought to contribute to the adaptation to extreme environments. However, the biosynthesis of these lipids is poorly understood. Here, we identify a radical S-adenosyl-L-methionine (SAM) enzyme that synthesizes glycerol monoalkyl glycerol tetraethers (GMGTs). The enzyme, which we name GMGT synthase (Gms), catalyzes the formation of a C(sp 3 )-C(sp 3 ) linkage between the two isoprenoid chains of glycerol dialkyl glycerol tetraethers (GDGTs). This conclusion is supported by heterologous expression of gene gms from a GMGT-producing species in a methanogen, as well as demonstration of in vitro activity using purified Gms enzyme. Additionally, we show that genes encoding putative Gms homologs are present in obligate anaerobic archaea and in metagenomes obtained from oxygen-deficient environments, and appear to be absent in metagenomes from oxic settings.
(© 2024. The Author(s).)
References: ACS Bio Med Chem Au. 2022 Feb 16;2(1):22-35. (PMID: 36119373)
Cell Rep. 2023 Mar 28;42(3):112158. (PMID: 36827180)
Bioinformatics. 2014 May 1;30(9):1312-3. (PMID: 24451623)
Archaea. 2014 Jan 23;2014:327637. (PMID: 24669201)
Nat Rev Microbiol. 2021 Dec;19(12):774-785. (PMID: 34183820)
Chem Rev. 2014 Apr 23;114(8):4229-317. (PMID: 24476342)
J Magn Reson. 2006 Jan;178(1):42-55. (PMID: 16188474)
Extremophiles. 2008 Jan;12(1):119-24. (PMID: 17901915)
Nat Rev Microbiol. 2022 Apr;20(4):219-235. (PMID: 34754082)
Bioinformatics. 2006 Jul 1;22(13):1658-9. (PMID: 16731699)
ISME Commun. 2022 Jan 20;2(1):4. (PMID: 37938653)
Nat Rev Microbiol. 2007 Apr;5(4):316-23. (PMID: 17334387)
Nucleic Acids Res. 2016 Jul 8;44(W1):W242-5. (PMID: 27095192)
Biochim Biophys Acta. 1998 Feb 23;1390(3):339-45. (PMID: 9487155)
Org Biomol Chem. 2007 Jun 21;5(12):1873-7. (PMID: 17551635)
Sci Adv. 2022 Nov 4;8(44):eabm9651. (PMID: 36332026)
Proc Natl Acad Sci U S A. 2019 Nov 5;116(45):22505-22511. (PMID: 31591189)
Nat Methods. 2022 Jun;19(6):679-682. (PMID: 35637307)
Nat Commun. 2022 Mar 22;13(1):1545. (PMID: 35318330)
mSystems. 2023 Aug 31;8(4):e0030523. (PMID: 37458475)
J Mass Spectrom. 2015 Dec;50(12):1420-32. (PMID: 26634977)
ACS Bio Med Chem Au. 2022 Feb 16;2(3):196-204. (PMID: 37101575)
Biomolecules. 2020 May 29;10(6):. (PMID: 32485936)
Extremophiles. 2020 May;24(3):413-420. (PMID: 32200441)
Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):15996-6003. (PMID: 22967509)
Sci Rep. 2020 Jan 15;10(1):294. (PMID: 31941956)
Nature. 2022 Sep;609(7925):197-203. (PMID: 35882349)
Biochim Biophys Acta. 2015 Jun;1853(6):1370-94. (PMID: 25686535)
Biochemistry. 2019 Dec 24;58(51):5173-5187. (PMID: 31769977)
Nat Commun. 2022 Jun 30;13(1):3773. (PMID: 35773279)
J Am Chem Soc. 2020 Jun 17;142(24):10841-10848. (PMID: 32434327)
Nat Microbiol. 2022 Feb;7(2):200-212. (PMID: 35027677)
Front Microbiol. 2012 Jun 13;3:214. (PMID: 22707949)
Phys Chem Chem Phys. 2009 Aug 21;11(31):6614-25. (PMID: 19639136)
Rapid Commun Mass Spectrom. 2000;14(7):585-9. (PMID: 10775092)
Nature. 2023 Jan;613(7943):332-339. (PMID: 36544020)
Proc Natl Acad Sci U S A. 2017 Sep 26;114(39):10420-10425. (PMID: 28893989)
Environ Microbiol. 2022 Apr;24(4):2029-2046. (PMID: 35106897)
ISME J. 2022 Jun;16(6):1583-1593. (PMID: 35173296)
Extremophiles. 2011 Jul;15(4):517-28. (PMID: 21630026)
Nature. 2023 Jun;618(7967):992-999. (PMID: 37316666)
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7. (PMID: 15034147)
Methods Enzymol. 2011;494:43-73. (PMID: 21402209)
ISME Commun. 2022 Sep 20;2(1):86. (PMID: 37938354)
Sci Adv. 2023 Jun 28;9(26):eadg6004. (PMID: 37379385)
معلومات مُعتمدة: 92351301 National Science Foundation of China | National Natural Science Foundation of China-Yunnan Joint Fund (NSFC-Yunnan Joint Fund)
المشرفين على المادة: 7LP2MPO46S (S-Adenosylmethionine)
S88TT14065 (Oxygen)
0 (Archaeal Proteins)
PDC6A3C0OX (Glycerol)
تواريخ الأحداث: Date Created: 20240619 Date Completed: 20240619 Latest Revision: 20240622
رمز التحديث: 20240622
مُعرف محوري في PubMed: PMC11186832
DOI: 10.1038/s41467-024-49650-x
PMID: 38898040
قاعدة البيانات: MEDLINE
الوصف
تدمد:2041-1723
DOI:10.1038/s41467-024-49650-x