دورية أكاديمية
أعرض في EDS

Time-calibrated phylogenetic and chromosomal mobilome analyses of Staphylococcus aureus CC398 reveal geographical and host-related evolution.

التفاصيل البيبلوغرافية
العنوان: Time-calibrated phylogenetic and chromosomal mobilome analyses of Staphylococcus aureus CC398 reveal geographical and host-related evolution.
المؤلفون: Fernandez JE; Division of Molecular Bacterial Epidemiology and Infectious Diseases, Institute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Bern, Switzerland., Egli A; Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland., Overesch G; Center for Zoonoses, Animal Bacterial Diseases and Antimicrobial Resistance, Institute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Bern, Switzerland., Perreten V; Division of Molecular Bacterial Epidemiology and Infectious Diseases, Institute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Bern, Switzerland. vincent.perreten@unibe.ch.
المصدر: Nature communications [Nat Commun] 2024 Jul 01; Vol. 15 (1), pp. 5526. Date of Electronic Publication: 2024 Jul 01.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
أسماء مطبوعة: Original Publication: [London] : Nature Pub. Group
مواضيع طبية MeSH: Methicillin-Resistant Staphylococcus aureus*/genetics , Methicillin-Resistant Staphylococcus aureus*/classification , Methicillin-Resistant Staphylococcus aureus*/pathogenicity , Methicillin-Resistant Staphylococcus aureus*/isolation & purification , Staphylococcal Infections*/microbiology , Staphylococcal Infections*/epidemiology , Phylogeny* , Whole Genome Sequencing*, Animals ; Humans ; Europe/epidemiology ; Horses/microbiology ; Staphylococcus aureus/genetics ; Staphylococcus aureus/classification ; Staphylococcus aureus/pathogenicity ; Genome, Bacterial ; Virulence Factors/genetics ; Chromosomes, Bacterial/genetics ; Evolution, Molecular ; Swine
مستخلص: An international collection of Staphylococcus aureus of clonal complex (CC) 398 from diverse hosts spanning all continents and a 30 year-period is studied based on whole-genome sequencing (WGS) data. The collection consists of publicly available genomic data from 2994 strains and 134 recently sequenced Swiss methicillin-resistant S. aureus (MRSA) CC398 strains. A time-calibrated phylogeny reveals the presence of distinct phylogroups present in Asia, North and South America and Europe. European MRSA diverged from methicillin-susceptible S. aureus (MSSA) at the beginning of the 1950s. Two major European phylogroups (EP4 and EP5), which diverged approximately 1974, are the main drivers of MRSA CC398 spread in Europe. Within EP5, an emergent MRSA lineage spreading among the European horse population (EP5-Leq) diverged approximately 1996 from the pig lineage (EP5-Lpg), and also contains human-related strains. EP5-Leq is characterized by staphylococcal cassette chromosome mec (SCCmec) IVa and spa type t011 (CC398-IVa-t011), and EP5-Lpg by CC398-SCCmecVc-t011. The lineage-specific antibiotic resistance and virulence gene patterns are mostly mediated by the acquisition of mobile genetic elements like SCCmec, S. aureus Genomic Islands (SaGIs), prophages and transposons. Different combinations of virulence factors are present on S. aureus pathogenicity islands (SaPIs), and novel antimicrobial resistance gene containing elements are associated with certain lineages expanding in Europe. This WGS-based analysis reveals the actual evolutionary trajectory and epidemiological trend of the international MRSA CC398 population considering host, temporal, geographical and molecular factors. It provides a baseline for global WGS-based One-Health studies of adaptive evolution of MRSA CC398 as well as for local outbreak investigations.
(© 2024. The Author(s).)
References: Nucleic Acids Res. 2023 Jan 6;51(D1):D690-D699. (PMID: 36263822)
Front Microbiol. 2023 Jan 10;13:1067284. (PMID: 36704547)
Syst Biol. 2019 Mar 1;68(2):219-233. (PMID: 29961836)
Antimicrob Agents Chemother. 2011 Oct;55(10):4900-4. (PMID: 21768510)
Epidemiol Infect. 2012 Mar;140(3):383-9. (PMID: 22082716)
Vet Microbiol. 2009 Jan 1;133(1-2):138-44. (PMID: 18701224)
Appl Environ Microbiol. 2020 Feb 18;86(5):. (PMID: 31836575)
Schweiz Arch Tierheilkd. 2014 Jul;156(7):317-25. (PMID: 24973319)
Clin Microbiol Infect. 2008 Jan;14(1):29-34. (PMID: 17986212)
Front Microbiol. 2021 Jan 08;11:575321. (PMID: 33488532)
Vet Microbiol. 2010 Feb 24;141(1-2):96-102. (PMID: 19740613)
J Antimicrob Chemother. 2022 Jun 29;77(7):1796-1827. (PMID: 35445249)
Sci Rep. 2017 Jul 13;7(1):5273. (PMID: 28706213)
mSphere. 2018 Feb 14;3(1):. (PMID: 29468193)
PLoS One. 2011 Feb 09;6(2):e16830. (PMID: 21347386)
Vet World. 2022 Aug;15(8):1906-1915. (PMID: 36313842)
Syst Biol. 2018 Sep 1;67(5):901-904. (PMID: 29718447)
Mol Syst Biol. 2011 Oct 11;7:539. (PMID: 21988835)
Proc Natl Acad Sci U S A. 2012 Jun 5;109(23):9107-12. (PMID: 22586109)
Microbiol Spectr. 2019 May;7(3):. (PMID: 31172913)
BMC Bioinformatics. 2015 Mar 12;16:79. (PMID: 25888166)
Emerg Infect Dis. 2007 Feb;13(2):255-8. (PMID: 17479888)
PLoS Comput Biol. 2019 Apr 8;15(4):e1006650. (PMID: 30958812)
Syst Biol. 2024 Feb 17;:. (PMID: 38366939)
mBio. 2018 Nov 13;9(6):. (PMID: 30425152)
J Clin Microbiol. 2006 Dec;44(12):4444-54. (PMID: 17005735)
PLoS One. 2010 Jun 25;5(6):e11147. (PMID: 20593022)
Curr Environ Health Rep. 2015 Mar;2(1):41-51. (PMID: 26231241)
Virulence. 2011 May-Jun;2(3):241-3. (PMID: 21555917)
Bioinformatics. 2014 Aug 1;30(15):2114-20. (PMID: 24695404)
Vet Microbiol. 2015 Nov 18;180(3-4):304-7. (PMID: 26411322)
Bioinformatics. 2014 May 1;30(9):1312-3. (PMID: 24451623)
Nat Biotechnol. 2013 Apr;31(4):294-6. (PMID: 23563421)
Nat Rev Microbiol. 2010 Aug;8(8):541-51. (PMID: 20634809)
Microb Drug Resist. 2019 Oct;25(8):1219-1226. (PMID: 31066624)
Nat Rev Dis Primers. 2018 May 31;4:18033. (PMID: 29849094)
J Antimicrob Chemother. 2012 Nov;67(11):2640-4. (PMID: 22782487)
mBio. 2012 Feb 21;3(1):. (PMID: 22354957)
Curr Top Microbiol Immunol. 2016;398:55-87. (PMID: 27370344)
Microb Drug Resist. 2011 Sep;17(3):471-8. (PMID: 21875361)
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. (PMID: 28594827)
Foodborne Pathog Dis. 2017 Dec;14(12):735-741. (PMID: 29068722)
Zoonoses Public Health. 2014 May;61(3):192-201. (PMID: 23773775)
PLoS One. 2009 Aug 27;4(8):e6800. (PMID: 19710922)
Nucleic Acids Res. 2021 Jul 2;49(W1):W293-W296. (PMID: 33885785)
PeerJ. 2018 Jul 12;6:e5261. (PMID: 30013858)
Front Microbiol. 2016 Nov 09;7:1741. (PMID: 27881973)
Cureus. 2020 Jun 27;12(6):e8867. (PMID: 32617248)
BMC Microbiol. 2017 May 3;17(1):104. (PMID: 28468636)
Sci Rep. 2019 Dec 9;9(1):18655. (PMID: 31819134)
PLoS One. 2013 Nov 14;8(11):e79645. (PMID: 24244535)
Microb Drug Resist. 2008 Dec;14(4):307-10. (PMID: 19025385)
Schweiz Arch Tierheilkd. 2016 Jun;158(6):443-50. (PMID: 27504839)
BMC Infect Dis. 2017 Oct 19;17(1):690. (PMID: 29052523)
Elife. 2022 Jun 28;11:. (PMID: 35762208)
Genes (Basel). 2021 Oct 30;12(11):. (PMID: 34828356)
J Clin Microbiol. 2014 Dec;52(12):4305-8. (PMID: 25297335)
Int J Mol Sci. 2022 Jul 22;23(15):. (PMID: 35897667)
Microbiol Spectr. 2019 May;7(3):. (PMID: 31124433)
Microb Physiol. 2021;31(2):109-122. (PMID: 34126612)
Virus Evol. 2016 Apr 09;2(1):vew007. (PMID: 27774300)
Nucleic Acids Res. 2016 Jan 4;44(D1):D694-7. (PMID: 26578559)
Clin Microbiol Rev. 2018 Sep 12;31(4):. (PMID: 30209034)
Genome Biol. 2020 Jul 22;21(1):180. (PMID: 32698896)
Microbiology (Reading). 2007 Oct;153(Pt 10):3235-3245. (PMID: 17906123)
Int J Med Microbiol. 2011 Dec;301(8):630-4. (PMID: 21983338)
J Vet Intern Med. 2006 Jan-Feb;20(1):182-6. (PMID: 16496939)
Int J Med Microbiol. 2010 Feb;300(2-3):109-17. (PMID: 20005777)
Bioinformatics. 2021 Aug 25;37(16):2473-2475. (PMID: 33459763)
Virulence. 2021 Dec;12(1):547-569. (PMID: 33522395)
Mol Microbiol. 2010 Sep;77(6):1583-94. (PMID: 20860091)
Emerg Microbes Infect. 2021 Dec;10(1):1481-1494. (PMID: 34210245)
Appl Environ Microbiol. 2014 Dec;80(23):7275-82. (PMID: 25239891)
Expert Rev Vaccines. 2016 Nov;15(11):1373-1392. (PMID: 27118628)
Nucleic Acids Res. 2011 Aug;39(14):5866-78. (PMID: 21450808)
Bioinformatics. 2014 Jul 15;30(14):2068-9. (PMID: 24642063)
J Mol Biol. 1990 Oct 5;215(3):403-10. (PMID: 2231712)
Cell Rep Methods. 2021 Sep 27;1(5):100085. (PMID: 35474671)
Sci Rep. 2017 Jul 14;7(1):5499. (PMID: 28710350)
Proc Natl Acad Sci U S A. 2012 Mar 20;109(12):4550-5. (PMID: 22393007)
Nucleic Acids Res. 2015 Feb 18;43(3):e15. (PMID: 25414349)
Occup Environ Med. 2020 Oct 23;:. (PMID: 33097674)
Microb Pathog. 2016 Dec;101:56-67. (PMID: 27836760)
Microbiol Spectr. 2023 Feb 23;:e0421322. (PMID: 36815781)
Proc Natl Acad Sci U S A. 2014 May 6;111(18):6738-43. (PMID: 24753569)
Int J Med Microbiol. 2010 Feb;300(2-3):98-103. (PMID: 19811948)
معلومات مُعتمدة: 177504 Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation); 177504 Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation)
المشرفين على المادة: 0 (Virulence Factors)
تواريخ الأحداث: Date Created: 20240701 Date Completed: 20240701 Latest Revision: 20240704
رمز التحديث: 20240704
مُعرف محوري في PubMed: PMC11217367
DOI: 10.1038/s41467-024-49644-9
PMID: 38951499
قاعدة البيانات: MEDLINE
الوصف
تدمد:2041-1723
DOI:10.1038/s41467-024-49644-9