دورية أكاديمية
Genome-wide identification and expression analysis of the PP2C gene family in Apocynum venetum and Apocynum hendersonii.
العنوان: | Genome-wide identification and expression analysis of the PP2C gene family in Apocynum venetum and Apocynum hendersonii. |
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المؤلفون: | Chen J; Hunan Provincial Key Laboratory of the Traditional Chinese Medicine Agricultural Biogenomics, Changsha Medical University, Changsha, 410219, China., Wang Y; Hunan Provincial Key Laboratory of the Traditional Chinese Medicine Agricultural Biogenomics, Changsha Medical University, Changsha, 410219, China.; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha, 410205, China., Wu Y; Hunan Provincial Key Laboratory of the Traditional Chinese Medicine Agricultural Biogenomics, Changsha Medical University, Changsha, 410219, China., Huang X; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha, 410205, China., Qiu X; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha, 410205, China., Chen J; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha, 410205, China.; Yuelushan Laboratory, Changsha, 410082, P.R. China., Lin Q; Hunan Provincial Key Laboratory of the Traditional Chinese Medicine Agricultural Biogenomics, Changsha Medical University, Changsha, 410219, China.; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha, 410205, China., Zhao H; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha, 410205, China.; Yuelushan Laboratory, Changsha, 410082, P.R. China., Chen F; Hunan Provincial Key Laboratory of the Traditional Chinese Medicine Agricultural Biogenomics, Changsha Medical University, Changsha, 410219, China. cfming@csmu.edu.cn., Gao G; Hunan Provincial Key Laboratory of the Traditional Chinese Medicine Agricultural Biogenomics, Changsha Medical University, Changsha, 410219, China. gaogang@caas.cn.; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha, 410205, China. gaogang@caas.cn. |
المصدر: | BMC plant biology [BMC Plant Biol] 2024 Jul 09; Vol. 24 (1), pp. 652. Date of Electronic Publication: 2024 Jul 09. |
نوع المنشور: | Journal Article |
اللغة: | English |
بيانات الدورية: | Publisher: BioMed Central Country of Publication: England NLM ID: 100967807 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2229 (Electronic) Linking ISSN: 14712229 NLM ISO Abbreviation: BMC Plant Biol Subsets: MEDLINE |
أسماء مطبوعة: | Original Publication: London : BioMed Central, [2001- |
مواضيع طبية MeSH: | Apocynum*/genetics , Phylogeny*, Gene Expression Regulation, Plant ; Multigene Family ; Protein Phosphatase 2C/genetics ; Protein Phosphatase 2C/metabolism ; Phosphoprotein Phosphatases/genetics ; Phosphoprotein Phosphatases/metabolism ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Genome, Plant ; Salt Tolerance/genetics ; Genes, Plant ; Gene Expression Profiling |
مستخلص: | Background: Protein phosphatase class 2 C (PP2C) is the largest protein phosphatase family in plants. Members of the PP2C gene family are involved in a variety of physiological pathways in plants, including the abscisic acid signalling pathway, the regulation of plant growth and development, etc., and are capable of responding to a wide range of biotic and abiotic stresses, and play an important role in plant growth, development, and response to stress. Apocynum is a perennial persistent herb, divided into Apocynum venetum and Apocynum hendersonii. It mainly grows in saline soil, deserts and other harsh environments, and is widely used in saline soil improvement, ecological restoration, textiles and medicine. A. hendersonii was found to be more tolerant to adverse conditions. The main purpose of this study was to investigate the PP2C gene family and its expression pattern under salt stress and to identify important candidate genes related to salt tolerance. Results: In this study, 68 AvPP2C genes and 68 AhPP2C genes were identified from the genomes of A. venetum and A. hendersonii, respectively. They were classified into 13 subgroups based on their phylogenetic relationships and were further analyzed for their subcellular locations, gene structures, conserved structural domains, and cis-acting elements. The results of qRT-PCR analyses of seven AvPP2C genes and seven AhPP2C genes proved that they differed significantly in gene expression under salt stress. It has been observed that the PP2C genes in A. venetum and A. hendersonii exhibit different expression patterns. Specifically, AvPP2C2, 6, 24, 27, 41 and AhPP2C2, 6, 24, 27, 42 have shown significant differences in expression under salt stress. This indicates that these genes may play a crucial role in the salt tolerance mechanism of A. venetum and A. hendersonii. Conclusions: In this study, we conducted a genome-wide analysis of the AvPP2C and AhPP2C gene families in Apocynum, which provided a reference for further understanding the functional characteristics of these genes. (© 2024. The Author(s).) |
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معلومات مُعتمدة: | No.2022CYY023 and No.2022CYY006 ESI Discipline Special Project of Changsha Medical University; No.2022CYY023 and No.2022CYY006 ESI Discipline Special Project of Changsha Medical University; No.2022CYY023 and No.2022CYY006 ESI Discipline Special Project of Changsha Medical University; No.2022CYY023 and No.2022CYY006 ESI Discipline Special Project of Changsha Medical University; No.202210823006 National Undergraduate Innovation and Entrepreneurship Training Program Project under Grant; No.202210823006 National Undergraduate Innovation and Entrepreneurship Training Program Project under Grant; No.202210823006 National Undergraduate Innovation and Entrepreneurship Training Program Project under Grant; No.22C0674 Hunan Provincial Department of Education general project; No.22C0674 Hunan Provincial Department of Education general project; No.22C0674 Hunan Provincial Department of Education general project; No.22C0674 Hunan Provincial Department of Education general project; No.22C0674 Hunan Provincial Department of Education general project; No.22C0674 Hunan Provincial Department of Education general project; No.22C0674 Hunan Provincial Department of Education general project; No.22C0674 Hunan Provincial Department of Education general project; No.23A0662 Science Research Project of Hunan Provincial Department of Education; No.23A0662 Science Research Project of Hunan Provincial Department of Education; No.23A0662 Science Research Project of Hunan Provincial Department of Education; No.23A0662 Science Research Project of Hunan Provincial Department of Education; No.23A0662 Science Research Project of Hunan Provincial Department of Education |
فهرسة مساهمة: | Keywords: Apocynum; Protein phosphatase 2 C; Salt stress |
المشرفين على المادة: | EC 3.1.3.16 (Protein Phosphatase 2C) EC 3.1.3.16 (Phosphoprotein Phosphatases) 0 (Plant Proteins) |
تواريخ الأحداث: | Date Created: 20240709 Date Completed: 20240710 Latest Revision: 20240712 |
رمز التحديث: | 20240712 |
مُعرف محوري في PubMed: | PMC11232223 |
DOI: | 10.1186/s12870-024-05328-6 |
PMID: | 38982365 |
قاعدة البيانات: | MEDLINE |
تدمد: | 1471-2229 |
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DOI: | 10.1186/s12870-024-05328-6 |