دورية أكاديمية
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Genome-wide identification and expression analysis of the PP2C gene family in Apocynum venetum and Apocynum hendersonii.

التفاصيل البيبلوغرافية
العنوان: Genome-wide identification and expression analysis of the PP2C gene family in Apocynum venetum and Apocynum hendersonii.
المؤلفون: Chen J; Hunan Provincial Key Laboratory of the Traditional Chinese Medicine Agricultural Biogenomics, Changsha Medical University, Changsha, 410219, China., Wang Y; Hunan Provincial Key Laboratory of the Traditional Chinese Medicine Agricultural Biogenomics, Changsha Medical University, Changsha, 410219, China.; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha, 410205, China., Wu Y; Hunan Provincial Key Laboratory of the Traditional Chinese Medicine Agricultural Biogenomics, Changsha Medical University, Changsha, 410219, China., Huang X; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha, 410205, China., Qiu X; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha, 410205, China., Chen J; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha, 410205, China.; Yuelushan Laboratory, Changsha, 410082, P.R. China., Lin Q; Hunan Provincial Key Laboratory of the Traditional Chinese Medicine Agricultural Biogenomics, Changsha Medical University, Changsha, 410219, China.; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha, 410205, China., Zhao H; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha, 410205, China.; Yuelushan Laboratory, Changsha, 410082, P.R. China., Chen F; Hunan Provincial Key Laboratory of the Traditional Chinese Medicine Agricultural Biogenomics, Changsha Medical University, Changsha, 410219, China. cfming@csmu.edu.cn., Gao G; Hunan Provincial Key Laboratory of the Traditional Chinese Medicine Agricultural Biogenomics, Changsha Medical University, Changsha, 410219, China. gaogang@caas.cn.; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha, 410205, China. gaogang@caas.cn.
المصدر: BMC plant biology [BMC Plant Biol] 2024 Jul 09; Vol. 24 (1), pp. 652. Date of Electronic Publication: 2024 Jul 09.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: BioMed Central Country of Publication: England NLM ID: 100967807 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2229 (Electronic) Linking ISSN: 14712229 NLM ISO Abbreviation: BMC Plant Biol Subsets: MEDLINE
أسماء مطبوعة: Original Publication: London : BioMed Central, [2001-
مواضيع طبية MeSH: Apocynum*/genetics , Phylogeny*, Gene Expression Regulation, Plant ; Multigene Family ; Protein Phosphatase 2C/genetics ; Protein Phosphatase 2C/metabolism ; Phosphoprotein Phosphatases/genetics ; Phosphoprotein Phosphatases/metabolism ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Genome, Plant ; Salt Tolerance/genetics ; Genes, Plant ; Gene Expression Profiling
مستخلص: Background: Protein phosphatase class 2 C (PP2C) is the largest protein phosphatase family in plants. Members of the PP2C gene family are involved in a variety of physiological pathways in plants, including the abscisic acid signalling pathway, the regulation of plant growth and development, etc., and are capable of responding to a wide range of biotic and abiotic stresses, and play an important role in plant growth, development, and response to stress. Apocynum is a perennial persistent herb, divided into Apocynum venetum and Apocynum hendersonii. It mainly grows in saline soil, deserts and other harsh environments, and is widely used in saline soil improvement, ecological restoration, textiles and medicine. A. hendersonii was found to be more tolerant to adverse conditions. The main purpose of this study was to investigate the PP2C gene family and its expression pattern under salt stress and to identify important candidate genes related to salt tolerance.
Results: In this study, 68 AvPP2C genes and 68 AhPP2C genes were identified from the genomes of A. venetum and A. hendersonii, respectively. They were classified into 13 subgroups based on their phylogenetic relationships and were further analyzed for their subcellular locations, gene structures, conserved structural domains, and cis-acting elements. The results of qRT-PCR analyses of seven AvPP2C genes and seven AhPP2C genes proved that they differed significantly in gene expression under salt stress. It has been observed that the PP2C genes in A. venetum and A. hendersonii exhibit different expression patterns. Specifically, AvPP2C2, 6, 24, 27, 41 and AhPP2C2, 6, 24, 27, 42 have shown significant differences in expression under salt stress. This indicates that these genes may play a crucial role in the salt tolerance mechanism of A. venetum and A. hendersonii.
Conclusions: In this study, we conducted a genome-wide analysis of the AvPP2C and AhPP2C gene families in Apocynum, which provided a reference for further understanding the functional characteristics of these genes.
(© 2024. The Author(s).)
References: Plant Cell. 2023 Jan 2;35(1):279-297. (PMID: 36149299)
Phytomedicine. 2022 Jan;94:153815. (PMID: 34781232)
Protoplasma. 2018 Mar;255(2):643-654. (PMID: 29052008)
J Agric Food Chem. 2024 Jun 5;72(22):12445-12458. (PMID: 38771652)
New Phytol. 2022 Mar;233(5):2168-2184. (PMID: 34932819)
Front Plant Sci. 2021 Mar 09;12:636098. (PMID: 33767720)
Mol Genet Genomics. 2022 Jan;297(1):125-145. (PMID: 34978004)
J Biol Chem. 2003 May 23;278(21):18945-52. (PMID: 12646559)
Environ Sci Pollut Res Int. 2018 Feb;25(5):5040-5046. (PMID: 29344914)
iScience. 2023 Apr 28;26(5):106772. (PMID: 37250304)
Science. 2006 Apr 14;312(5771):264-6. (PMID: 16614222)
PLoS One. 2015 Apr 17;10(4):e0125168. (PMID: 25886365)
Mol Biol Evol. 2018 Jun 1;35(6):1547-1549. (PMID: 29722887)
Int J Mol Sci. 2023 Feb 17;24(4):. (PMID: 36835472)
Cell. 2016 Oct 6;167(2):313-324. (PMID: 27716505)
Nucleic Acids Res. 2012 Apr;40(7):e49. (PMID: 22217600)
Int J Mol Sci. 2019 Jul 22;20(14):. (PMID: 31336603)
New Phytol. 2023 Mar;237(5):1728-1744. (PMID: 36444538)
Science. 2000 Nov 10;290(5494):1151-5. (PMID: 11073452)
BMC Genomics. 2022 Aug 6;23(1):563. (PMID: 35933381)
Int J Mol Sci. 2022 Dec 01;23(23):. (PMID: 36499437)
Front Plant Sci. 2023 Mar 27;14:1123856. (PMID: 37051078)
J Integr Plant Biol. 2023 Aug;65(8):1918-1936. (PMID: 37158049)
J Dermatol Sci. 2022 May;106(2):111-118. (PMID: 35491288)
Hortic Res. 2017 Dec 27;4:17079. (PMID: 29285397)
Mol Plant. 2020 Aug 3;13(8):1194-1202. (PMID: 32585190)
J Exp Bot. 2014 Oct;65(18):5385-400. (PMID: 25038254)
Front Nutr. 2023 Feb 27;10:1125746. (PMID: 36923696)
Plant Cell. 2014 May 23;26(5):2129-2142. (PMID: 24858935)
Mol Biol Evol. 1987 Jul;4(4):406-25. (PMID: 3447015)
Nucleic Acids Res. 2021 Jul 2;49(W1):W293-W296. (PMID: 33885785)
Int J Mol Sci. 2023 Feb 26;24(5):. (PMID: 36902009)
BMC Plant Biol. 2004 Jun 01;4:10. (PMID: 15171794)
Cell Mol Life Sci. 2024 Mar 5;81(1):117. (PMID: 38443747)
BMC Genomics. 2016 Mar 03;17:175. (PMID: 26935448)
Plant Physiol. 2023 May 31;192(2):1498-1516. (PMID: 36823690)
Int J Mol Sci. 2023 Feb 11;24(4):. (PMID: 36835035)
Mol Plant. 2016 Jan 4;9(1):136-147. (PMID: 26499068)
Biology (Basel). 2023 Nov 28;12(12):. (PMID: 38132301)
BMC Plant Biol. 2020 Sep 3;20(1):408. (PMID: 32883231)
Plant Physiol. 2021 Feb 25;185(1):256-273. (PMID: 33631805)
Methods Mol Biol. 2011;779:149-61. (PMID: 21837565)
Science. 2009 May 22;324(5930):1064-8. (PMID: 19407143)
Nucleic Acids Res. 2021 Jan 8;49(D1):D412-D419. (PMID: 33125078)
Plant Cell. 2011 Nov;23(11):3974-91. (PMID: 22108407)
Plant J. 2021 Jan;105(2):307-321. (PMID: 33145840)
Biochim Biophys Acta Mol Basis Dis. 2020 Dec 1;1866(12):165920. (PMID: 32800946)
Nat Rev Mol Cell Biol. 2022 Oct;23(10):680-694. (PMID: 35513717)
Int J Mol Sci. 2019 Mar 20;20(6):. (PMID: 30897702)
Plants (Basel). 2023 Sep 01;12(17):. (PMID: 37687398)
Mol Med Rep. 2019 Mar;19(3):2245-2253. (PMID: 30664213)
BMC Genomics. 2008 Nov 20;9:550. (PMID: 19021904)
Trends Plant Sci. 2004 May;9(5):236-43. (PMID: 15130549)
Nucleic Acids Res. 2009 Jul;37(Web Server issue):W202-8. (PMID: 19458158)
PLoS Biol. 2016 May 18;14(5):e1002461. (PMID: 27192441)
Annu Rev Plant Biol. 2003;54:63-92. (PMID: 14502985)
Curr Biol. 2003 Feb 4;13(3):179-88. (PMID: 12573213)
معلومات مُعتمدة: No.2022CYY023 and No.2022CYY006 ESI Discipline Special Project of Changsha Medical University; No.2022CYY023 and No.2022CYY006 ESI Discipline Special Project of Changsha Medical University; No.2022CYY023 and No.2022CYY006 ESI Discipline Special Project of Changsha Medical University; No.2022CYY023 and No.2022CYY006 ESI Discipline Special Project of Changsha Medical University; No.202210823006 National Undergraduate Innovation and Entrepreneurship Training Program Project under Grant; No.202210823006 National Undergraduate Innovation and Entrepreneurship Training Program Project under Grant; No.202210823006 National Undergraduate Innovation and Entrepreneurship Training Program Project under Grant; No.22C0674 Hunan Provincial Department of Education general project; No.22C0674 Hunan Provincial Department of Education general project; No.22C0674 Hunan Provincial Department of Education general project; No.22C0674 Hunan Provincial Department of Education general project; No.22C0674 Hunan Provincial Department of Education general project; No.22C0674 Hunan Provincial Department of Education general project; No.22C0674 Hunan Provincial Department of Education general project; No.22C0674 Hunan Provincial Department of Education general project; No.23A0662 Science Research Project of Hunan Provincial Department of Education; No.23A0662 Science Research Project of Hunan Provincial Department of Education; No.23A0662 Science Research Project of Hunan Provincial Department of Education; No.23A0662 Science Research Project of Hunan Provincial Department of Education; No.23A0662 Science Research Project of Hunan Provincial Department of Education
فهرسة مساهمة: Keywords: Apocynum; Protein phosphatase 2 C; Salt stress
المشرفين على المادة: EC 3.1.3.16 (Protein Phosphatase 2C)
EC 3.1.3.16 (Phosphoprotein Phosphatases)
0 (Plant Proteins)
تواريخ الأحداث: Date Created: 20240709 Date Completed: 20240710 Latest Revision: 20240712
رمز التحديث: 20240712
مُعرف محوري في PubMed: PMC11232223
DOI: 10.1186/s12870-024-05328-6
PMID: 38982365
قاعدة البيانات: MEDLINE
الوصف
تدمد:1471-2229
DOI:10.1186/s12870-024-05328-6