دورية أكاديمية

KAP1 negatively regulates RNA polymerase II elongation kinetics to activate signal-induced transcription.

التفاصيل البيبلوغرافية
العنوان: KAP1 negatively regulates RNA polymerase II elongation kinetics to activate signal-induced transcription.
المؤلفون: Hyder U; Department of Microbiology, The University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA., Challa A; Department of Microbiology, The University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA., Thornton M; Laboratory of Signaling and Gene Regulation, Cecil H. and Ida Green Center for Reproductive Biology Sciences, The University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA., Nandu T; Laboratory of Signaling and Gene Regulation, Cecil H. and Ida Green Center for Reproductive Biology Sciences, The University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA., Kraus WL; Laboratory of Signaling and Gene Regulation, Cecil H. and Ida Green Center for Reproductive Biology Sciences, The University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA., D'Orso I; Department of Microbiology, The University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA. Ivan.Dorso@utsouthwestern.edu.
المصدر: Nature communications [Nat Commun] 2024 Jul 12; Vol. 15 (1), pp. 5859. Date of Electronic Publication: 2024 Jul 12.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
أسماء مطبوعة: Original Publication: [London] : Nature Pub. Group
مواضيع طبية MeSH: Tripartite Motif-Containing Protein 28*/metabolism , Tripartite Motif-Containing Protein 28*/genetics , RNA Polymerase II*/metabolism, Humans ; Kinetics ; Transcription Elongation, Genetic ; Genes, Immediate-Early ; Transcription, Genetic ; Signal Transduction ; Transcriptional Activation ; Animals
مستخلص: Signal-induced transcriptional programs regulate critical biological processes through the precise spatiotemporal activation of Immediate Early Genes (IEGs); however, the mechanisms of transcription induction remain poorly understood. By combining an acute depletion system with several genomics approaches to interrogate synchronized, temporal transcription, we reveal that KAP1/TRIM28 is a first responder that fulfills the temporal and heightened transcriptional demand of IEGs. Acute KAP1 loss triggers an increase in RNA polymerase II elongation kinetics during early stimulation time points. This elongation defect derails the normal progression through the transcriptional cycle during late stimulation time points, ultimately leading to decreased recruitment of the transcription apparatus for re-initiation thereby dampening IEGs transcriptional output. Collectively, KAP1 plays a counterintuitive role by negatively regulating transcription elongation to support full activation across multiple transcription cycles of genes critical for cell physiology and organismal functions.
(© 2024. The Author(s).)
التعليقات: Update of: bioRxiv. 2024 May 05:2024.05.05.592422. doi: 10.1101/2024.05.05.592422. (PMID: 38746145)
References: Nat Genet. 2022 Aug;54(8):1238-1247. (PMID: 35864192)
DNA Repair (Amst). 2018 Nov;71:69-81. (PMID: 30190235)
Science. 2016 Jun 3;352(6290):1225-8. (PMID: 27257258)
Mol Cell. 2018 Aug 2;71(3):389-397. (PMID: 30075140)
Nucleic Acids Res. 2023 Apr 11;51(6):2818-2837. (PMID: 36864660)
Nat Commun. 2019 Aug 9;10(1):3603. (PMID: 31399571)
Mol Cell. 2016 Jan 7;61(1):39-53. (PMID: 26725010)
Nat Rev Mol Cell Biol. 2018 Apr;19(4):262-274. (PMID: 29209056)
Nature. 1997 Sep 25;389(6649):399-402. (PMID: 9311784)
Cell. 1993 Apr 23;73(2):381-93. (PMID: 8386592)
Mol Cell. 2008 Jul 25;31(2):167-77. (PMID: 18657500)
Bioinformatics. 2010 Sep 1;26(17):2204-7. (PMID: 20639541)
Mol Cell. 2005 Aug 5;19(3):381-91. (PMID: 16061184)
Nat Struct Mol Biol. 2008 Jan;15(1):71-8. (PMID: 18157150)
Nat Rev Mol Cell Biol. 2015 Mar;16(3):167-77. (PMID: 25693130)
Oncogene. 2017 May 25;36(21):2991-3001. (PMID: 28068325)
Nat Rev Genet. 2019 Dec;20(12):705-723. (PMID: 31399713)
BMC Bioinformatics. 2013 Apr 15;14:128. (PMID: 23586463)
Nucleic Acids Res. 2016 Jul 8;44(W1):W160-5. (PMID: 27079975)
Mol Cell. 2008 Jan 18;29(1):56-68. (PMID: 18206969)
Mol Cell. 2001 Aug;8(2):327-37. (PMID: 11545735)
Nat Struct Mol Biol. 2019 Sep;26(9):783-791. (PMID: 31439941)
Cell. 2015 Jun 18;161(7):1592-605. (PMID: 26052046)
Mol Cell. 2010 Nov 12;40(3):410-22. (PMID: 21070967)
Nat Commun. 2018 Nov 27;9(1):5007. (PMID: 30479348)
Mol Cell. 2019 Dec 19;76(6):896-908.e4. (PMID: 31677974)
Genes Dev. 2002 Apr 15;16(8):919-32. (PMID: 11959841)
Genes Dev. 2014 Jul 1;28(13):1384-96. (PMID: 24990962)
Genes Dev. 2005 Dec 15;19(24):2969-78. (PMID: 16319194)
Cell. 2016 Mar 24;165(1):165-179. (PMID: 26924576)
Genes Dev. 2020 Jan 1;34(1-2):132-145. (PMID: 31805520)
Mol Cell. 2010 Sep 24;39(6):963-74. (PMID: 20864041)
Biochim Biophys Acta. 2012 May;1819(5):391-400. (PMID: 22306664)
Mol Cell. 2011 Jun 24;42(6):794-805. (PMID: 21700224)
Nat Genet. 2004 Sep;36(9):1014-8. (PMID: 15314641)
Mol Cell. 2009 Feb 13;33(3):354-64. (PMID: 19217409)
J Biol Chem. 2009 Sep 11;284(37):25015-25. (PMID: 19602510)
Genome Res. 2014 Jun;24(6):896-905. (PMID: 24714810)
Nat Neurosci. 2013 May;16(5):613-21. (PMID: 23525040)
Bioinformatics. 2009 Jul 15;25(14):1841-2. (PMID: 19468054)
Nat Commun. 2015 Dec 16;6:10191. (PMID: 26671524)
Science. 2008 Mar 28;319(5871):1791-2. (PMID: 18369138)
EMBO J. 1999 Nov 15;18(22):6385-95. (PMID: 10562550)
Transcription. 2019 Apr;10(2):57-75. (PMID: 30227759)
Mol Cell. 2013 Apr 25;50(2):212-22. (PMID: 23523369)
Mol Cell. 2020 Jun 18;78(6):1133-1151.e14. (PMID: 32402252)
Curr Opin Genet Dev. 2005 Apr;15(2):136-44. (PMID: 15797196)
Cell. 2021 Jul 22;184(15):4064-4072.e28. (PMID: 34133942)
Mol Cell. 2005 Jul 22;19(2):147-57. (PMID: 16039585)
Nat Commun. 2022 Jan 14;13(1):316. (PMID: 35031618)
EMBO J. 2009 Apr 22;28(8):1067-77. (PMID: 19279664)
Genes Dev. 2000 Oct 15;14(20):2551-69. (PMID: 11040209)
Genes Dev. 2022 Oct 1;36(19-20):1062-1078. (PMID: 36396340)
Cell. 1995 Jan 27;80(2):199-211. (PMID: 7834740)
Science. 2016 Jun 10;352(6291):aad9926. (PMID: 27284201)
Genes Dev. 2003 Jun 1;17(11):1402-14. (PMID: 12782658)
Mol Cell. 2022 Mar 3;82(5):986-1002.e9. (PMID: 35182480)
Cell Rep. 2018 Apr 17;23(3):796-807. (PMID: 29669285)
Mol Cell Biol. 2002 Jul;22(13):4622-37. (PMID: 12052871)
Sci Adv. 2021 Jan 13;7(3):. (PMID: 33523892)
Mol Cell. 2011 Nov 4;44(3):348-60. (PMID: 22055182)
Curr Protoc Bioinformatics. 2019 Jun;66(1):e70. (PMID: 30589513)
Nat Chem Biol. 2018 May;14(5):431-441. (PMID: 29581585)
Nat Commun. 2020 Aug 28;11(1):4338. (PMID: 32859893)
Nature. 2018 Jun;558(7710):460-464. (PMID: 29899453)
Nat Genet. 2007 Dec;39(12):1512-6. (PMID: 17994019)
Methods Mol Biol. 2019;1953:105-119. (PMID: 30912018)
Nat Struct Mol Biol. 2015 May;22(5):396-403. (PMID: 25849141)
Trends Biochem Sci. 2015 Sep;40(9):516-25. (PMID: 26254229)
Nat Struct Mol Biol. 2014 Oct;21(10):876-83. (PMID: 25173174)
Nat Struct Mol Biol. 2012 Nov;19(11):1108-15. (PMID: 23064645)
J Biol Chem. 2011 May 27;286(21):18816-24. (PMID: 21467039)
Nat Struct Mol Biol. 2007 Jul;14(7):662-9. (PMID: 17572685)
Trends Biochem Sci. 2003 Apr;28(4):202-9. (PMID: 12713904)
Genome Res. 2012 Aug;22(8):1426-36. (PMID: 22684280)
Nature. 2010 Jan 14;463(7278):237-40. (PMID: 20075919)
J Immunol. 2009 Oct 15;183(8):5129-37. (PMID: 19783677)
Front Cell Infect Microbiol. 2022 Feb 23;12:834636. (PMID: 35281453)
Mol Cell. 2006 Jan 20;21(2):227-37. (PMID: 16427012)
Nat Immunol. 2012 Apr 29;13(6):596-603. (PMID: 22544392)
Nat Struct Mol Biol. 2010 Feb;17(2):194-201. (PMID: 20098423)
Mol Cell. 2015 Oct 15;60(2):256-67. (PMID: 26474067)
Nature. 2018 Aug;560(7720):601-606. (PMID: 30135580)
Mol Cell Biol. 2000 May;20(9):2970-83. (PMID: 10757782)
Curr Opin Cell Biol. 2005 Jun;17(3):251-6. (PMID: 15901493)
Mol Cell. 2023 Feb 2;83(3):404-415. (PMID: 36634677)
Development. 2000 Jul;127(13):2955-63. (PMID: 10851139)
Cell Rep. 2019 Apr 2;27(1):154-171.e9. (PMID: 30943398)
Nature. 2019 Sep;573(7772):45-54. (PMID: 31462772)
Mol Cell. 2013 Jan 10;49(1):55-66. (PMID: 23177741)
Science. 2006 Jun 23;312(5781):1798-802. (PMID: 16794079)
Curr Opin Cell Biol. 2004 Jun;16(3):256-62. (PMID: 15145349)
Mol Cell. 2021 Aug 5;81(15):3096-3109.e8. (PMID: 34146481)
Mol Cell. 2021 Oct 7;81(19):4041-4058.e15. (PMID: 34624217)
Nature. 2022 Sep;609(7926):327-334. (PMID: 36002569)
معلومات مُعتمدة: R03 CA259672 United States CA NCI NIH HHS; F99CA264296 U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI); R01 AI114362 United States AI NIAID NIH HHS; P30 CA142543 United States CA NCI NIH HHS; P50 CA196516 United States CA NCI NIH HHS; P50 CA070907 United States CA NCI NIH HHS; F99 CA264296 United States CA NCI NIH HHS; R01 DK058110 United States DK NIDDK NIH HHS; R01DK058110 U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases)
المشرفين على المادة: EC 2.3.2.27 (Tripartite Motif-Containing Protein 28)
EC 2.7.7.- (RNA Polymerase II)
EC 2.3.2.27 (TRIM28 protein, human)
تواريخ الأحداث: Date Created: 20240712 Date Completed: 20240712 Latest Revision: 20240722
رمز التحديث: 20240722
مُعرف محوري في PubMed: PMC11245487
DOI: 10.1038/s41467-024-49905-7
PMID: 38997286
قاعدة البيانات: MEDLINE
الوصف
تدمد:2041-1723
DOI:10.1038/s41467-024-49905-7