دورية أكاديمية
أعرض في EDS

Pan-Genome Provides Insights into Vibrio Evolution and Adaptation to Deep-Sea Hydrothermal Vents.

التفاصيل البيبلوغرافية
العنوان: Pan-Genome Provides Insights into Vibrio Evolution and Adaptation to Deep-Sea Hydrothermal Vents.
المؤلفون: Bosi E; Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, Genoa 16132, Italy.; National Biodiversity Future Center, Palermo, Italy., Taviani E; Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, Genoa 16132, Italy.; National Biodiversity Future Center, Palermo, Italy., Avesani A; Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, Genoa 16132, Italy., Doni L; Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, Genoa 16132, Italy.; National Biodiversity Future Center, Palermo, Italy., Auguste M; Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, Genoa 16132, Italy.; National Biodiversity Future Center, Palermo, Italy., Oliveri C; Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, Genoa 16132, Italy., Leonessi M; Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, Genoa 16132, Italy.; National Biodiversity Future Center, Palermo, Italy., Martinez-Urtaza J; Facultat de Biociéncies, Department of Genetics and Microbiology, Universitat Autònoma de Barcelona (UAB), Bellaterra, Barcelona 08193, Spain., Vetriani C; Department of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ 08901, USA.; Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ 08901, USA., Vezzulli L; Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, Genoa 16132, Italy.; National Biodiversity Future Center, Palermo, Italy.
المصدر: Genome biology and evolution [Genome Biol Evol] 2024 Jul 03; Vol. 16 (7).
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 101509707 Publication Model: Print Cited Medium: Internet ISSN: 1759-6653 (Electronic) Linking ISSN: 17596653 NLM ISO Abbreviation: Genome Biol Evol Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Oxford, UK : Oxford University Press
مواضيع طبية MeSH: Vibrio*/genetics , Hydrothermal Vents*/microbiology , Genome, Bacterial* , Phylogeny*, Evolution, Molecular ; Adaptation, Physiological/genetics ; Pacific Ocean
مستخلص: This study delves into the genomic features of 10 Vibrio strains collected from deep-sea hydrothermal vents in the Pacific Ocean, providing insights into their evolutionary history and ecological adaptations. Through sequencing and pan-genome analysis involving 141 Vibrio species, we found that deep-sea strains exhibit larger genomes with unique gene distributions, suggesting adaptation to the vent environment. The phylogenomic reconstruction of the investigated isolates revealed the presence of 2 main clades: The first is monophyletic, consisting exclusively of Vibrio alginolyticus, while the second forms a monophyletic clade comprising both Vibrio antiquarius and Vibrio diabolicus species, which were previously isolated from deep-sea vents. All strains carry virulence and antibiotic resistance genes related to those found in human pathogenic Vibrio species which may play a wider ecological role other than host infection in these environments. In addition, functional genomic analysis identified genes potentially related to deep-sea survival and stress response, alongside candidate genes encoding for novel antimicrobial agents. Ultimately, the pan-genome we generated represents a valuable resource for future studies investigating the taxonomy, evolution, and ecology of Vibrio species.
(© The Author(s) 2024. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution.)
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معلومات مُعتمدة: CN00000033 "National Biodiversity Future Center-NBFC; 201728ZA49_002 PRIN 2017 "Emergence of virulence; 2021 SGR 00526 Ministerio de Ciencia e Innovación; Generalitat de Catalunya; National Science Foundation; 19-48623 OCE; 19-51690 IOS; 80NSSC21K0485 United States NASA NASA
فهرسة مساهمة: Keywords: Vibrio; antibiotic resistance genes; comparative genomics; deep-sea hydrothermal vents; pan-genome; virulence factors
تواريخ الأحداث: Date Created: 20240715 Date Completed: 20240715 Latest Revision: 20240717
رمز التحديث: 20240717
مُعرف محوري في PubMed: PMC11247349
DOI: 10.1093/gbe/evae131
PMID: 39007295
قاعدة البيانات: MEDLINE
الوصف
تدمد:1759-6653
DOI:10.1093/gbe/evae131