دورية أكاديمية
Pan-Genome Provides Insights into Vibrio Evolution and Adaptation to Deep-Sea Hydrothermal Vents.
العنوان: | Pan-Genome Provides Insights into Vibrio Evolution and Adaptation to Deep-Sea Hydrothermal Vents. |
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المؤلفون: | Bosi E; Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, Genoa 16132, Italy.; National Biodiversity Future Center, Palermo, Italy., Taviani E; Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, Genoa 16132, Italy.; National Biodiversity Future Center, Palermo, Italy., Avesani A; Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, Genoa 16132, Italy., Doni L; Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, Genoa 16132, Italy.; National Biodiversity Future Center, Palermo, Italy., Auguste M; Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, Genoa 16132, Italy.; National Biodiversity Future Center, Palermo, Italy., Oliveri C; Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, Genoa 16132, Italy., Leonessi M; Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, Genoa 16132, Italy.; National Biodiversity Future Center, Palermo, Italy., Martinez-Urtaza J; Facultat de Biociéncies, Department of Genetics and Microbiology, Universitat Autònoma de Barcelona (UAB), Bellaterra, Barcelona 08193, Spain., Vetriani C; Department of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ 08901, USA.; Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ 08901, USA., Vezzulli L; Department of Earth, Environmental and Life Sciences (DISTAV), University of Genoa, Genoa 16132, Italy.; National Biodiversity Future Center, Palermo, Italy. |
المصدر: | Genome biology and evolution [Genome Biol Evol] 2024 Jul 03; Vol. 16 (7). |
نوع المنشور: | Journal Article |
اللغة: | English |
بيانات الدورية: | Publisher: Oxford University Press Country of Publication: England NLM ID: 101509707 Publication Model: Print Cited Medium: Internet ISSN: 1759-6653 (Electronic) Linking ISSN: 17596653 NLM ISO Abbreviation: Genome Biol Evol Subsets: MEDLINE |
أسماء مطبوعة: | Original Publication: Oxford, UK : Oxford University Press |
مواضيع طبية MeSH: | Vibrio*/genetics , Hydrothermal Vents*/microbiology , Genome, Bacterial* , Phylogeny*, Evolution, Molecular ; Adaptation, Physiological/genetics ; Pacific Ocean |
مستخلص: | This study delves into the genomic features of 10 Vibrio strains collected from deep-sea hydrothermal vents in the Pacific Ocean, providing insights into their evolutionary history and ecological adaptations. Through sequencing and pan-genome analysis involving 141 Vibrio species, we found that deep-sea strains exhibit larger genomes with unique gene distributions, suggesting adaptation to the vent environment. The phylogenomic reconstruction of the investigated isolates revealed the presence of 2 main clades: The first is monophyletic, consisting exclusively of Vibrio alginolyticus, while the second forms a monophyletic clade comprising both Vibrio antiquarius and Vibrio diabolicus species, which were previously isolated from deep-sea vents. All strains carry virulence and antibiotic resistance genes related to those found in human pathogenic Vibrio species which may play a wider ecological role other than host infection in these environments. In addition, functional genomic analysis identified genes potentially related to deep-sea survival and stress response, alongside candidate genes encoding for novel antimicrobial agents. Ultimately, the pan-genome we generated represents a valuable resource for future studies investigating the taxonomy, evolution, and ecology of Vibrio species. (© The Author(s) 2024. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution.) |
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معلومات مُعتمدة: | CN00000033 "National Biodiversity Future Center-NBFC; 201728ZA49_002 PRIN 2017 "Emergence of virulence; 2021 SGR 00526 Ministerio de Ciencia e Innovación; Generalitat de Catalunya; National Science Foundation; 19-48623 OCE; 19-51690 IOS; 80NSSC21K0485 United States NASA NASA |
فهرسة مساهمة: | Keywords: Vibrio; antibiotic resistance genes; comparative genomics; deep-sea hydrothermal vents; pan-genome; virulence factors |
تواريخ الأحداث: | Date Created: 20240715 Date Completed: 20240715 Latest Revision: 20240717 |
رمز التحديث: | 20240717 |
مُعرف محوري في PubMed: | PMC11247349 |
DOI: | 10.1093/gbe/evae131 |
PMID: | 39007295 |
قاعدة البيانات: | MEDLINE |
تدمد: | 1759-6653 |
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DOI: | 10.1093/gbe/evae131 |