دورية أكاديمية
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Cytoplasmic genomes of Jasminum sambac reveal divergent sub-mitogenomic conformations and a large nuclear chloroplast-derived insertion.

التفاصيل البيبلوغرافية
العنوان: Cytoplasmic genomes of Jasminum sambac reveal divergent sub-mitogenomic conformations and a large nuclear chloroplast-derived insertion.
المؤلفون: Fang J; College of Life Science, Fujian Normal University, Fuzhou, China. jinphia@fjnu.edu.cn.; Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Brisbane, Australia. jinphia@fjnu.edu.cn., Lin A; Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Fujian Agriculture and Forestry University, Fuzhou, China., Yan H; Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Fujian Agriculture and Forestry University, Fuzhou, China., Feng L; College of Life Science, Fujian Normal University, Fuzhou, China.; Marine and Agricultural Biotechnology Laboratory, Fuzhou Institute of Oceanography, College of Geography and Oceanography, Minjiang University, Fuzhou, China., Lin S; College of Life Science, Fujian Normal University, Fuzhou, China., Mason P; Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Brisbane, Australia., Zhou L; College of Life Science, Fujian Normal University, Fuzhou, China., Xu X; Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Fujian Agriculture and Forestry University, Fuzhou, China., Zhao K; College of Life Science, Fujian Normal University, Fuzhou, China., Huang Y; Marine and Agricultural Biotechnology Laboratory, Fuzhou Institute of Oceanography, College of Geography and Oceanography, Minjiang University, Fuzhou, China. scolandry@foxmail.com., Henry RJ; Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Brisbane, Australia. robert.henry@uq.edu.au.
المصدر: BMC plant biology [BMC Plant Biol] 2024 Sep 14; Vol. 24 (1), pp. 861. Date of Electronic Publication: 2024 Sep 14.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: BioMed Central Country of Publication: England NLM ID: 100967807 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2229 (Electronic) Linking ISSN: 14712229 NLM ISO Abbreviation: BMC Plant Biol Subsets: MEDLINE
أسماء مطبوعة: Original Publication: London : BioMed Central, [2001-
مواضيع طبية MeSH: Genome, Mitochondrial* , Jasminum*/genetics , Genome, Plant*, Genome, Chloroplast ; Chloroplasts/genetics ; In Situ Hybridization, Fluorescence
مستخلص: Background: Jasminum sambac, a widely recognized ornamental plant prized for its aromatic blossoms, exhibits three flora phenotypes: single-petal ("SP"), double-petal ("DP"), and multi-petal ("MP"). The lack of detailed characterization and comparison of J. sambac mitochondrial genomes (mitogenomes) hinders the exploration of the genetic and structural diversity underlying the varying floral phenotypes in jasmine accessions.
Results: Here, we de novo assembled three mitogenomes of typical phenotypes of J. sambac, "SP", "DP", and "MP-hutou" ("HT"), with PacBio reads and the "HT" chloroplast (cp) genome with Illumina reads, and verified them with read mapping and fluorescence in situ hybridization (FISH). The three mitogenomes present divergent sub-genomic conformations, with two, two, and four autonomous circular chromosomes ranging in size from 35.7 kb to 405.3 kb. Each mitogenome contained 58 unique genes. Ribosome binding sites with conserved AAGAAx/AxAAAG motifs were detected upstream of uncanonical start codons TTG, CTG and GTG. The three mitogenomes were similar in genomic content but divergent in structure. The structural variations were mainly attributed to recombination mediated by a large (~ 5 kb) forward repeat pair and several short repeats. The three jasmine cp. genomes showed a well-conserved structure, apart from a 19.9 kb inversion in "HT". We identified a 14.3 kb "HT"-specific insertion on Chr7 of the "HT" nuclear genome, consisting of two 7 kb chloroplast-derived fragments with two intact ndhH and rps15 genes, further validated by polymerase chain reaction (PCR). The well-resolved phylogeny suggests faster mitogenome evolution in J. sambac compared to other Oleaceae species and outlines the mitogenome evolutionary trajectories within Lamiales. All evidence supports that "DP" and "HT" evolved from "SP", with "HT" being the most recent derivative of "DP".
Conclusion: The comprehensive characterization of jasmine organelle genomes has added to our knowledge of the structural diversity and evolutionary trajectories behind varying jasmine traits, paving the way for in-depth exploration of mechanisms and targeted genetic research.
(© 2024. The Author(s).)
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معلومات مُعتمدة: 2023J01132183 Natural Science Foundation of Fujian Province, China; 2023J01132183 Natural Science Foundation of Fujian Province, China; 2023J01132183 Natural Science Foundation of Fujian Province, China; 2023J01132183 Natural Science Foundation of Fujian Province, China
فهرسة مساهمة: Keywords: Jasminum sambac; Chloroplast-derived fragment; Mitochondrial genome; Phylogenetic tree; Repeat-mediated recombination; Subgenomic configurations
تواريخ الأحداث: Date Created: 20240913 Date Completed: 20240914 Latest Revision: 20240916
رمز التحديث: 20240916
مُعرف محوري في PubMed: PMC11401388
DOI: 10.1186/s12870-024-05557-9
PMID: 39272034
قاعدة البيانات: MEDLINE
الوصف
تدمد:1471-2229
DOI:10.1186/s12870-024-05557-9