التفاصيل البيبلوغرافية
العنوان: |
Highly Contiguous Genome Assembly of Arthrinium puccinoides. |
المؤلفون: |
Sørensen, Trine, Petersen, Celine, Fechete, Lavinia I, Nielsen, Kåre L, Sondergaard, Teis E |
المصدر: |
Genome Biology & Evolution; Jan2022, Vol. 14 Issue 1, p1-5, 5p |
مصطلحات موضوعية: |
GENOMES, METABOLITES, PHARMACEUTICAL industry, GENE clusters |
مستخلص: |
The phylogenetic relationship of the Arthrinium genus has changed throughout the years. For many years, the Arthrinium genus included the Apiospora genus as well. New evidence has now showed that these two genera in fact are phylogenetically different and belong to two different clades. Here, we present the first genome draft within the Arthrinium genus. This genome was sequenced using the MinION platform from Oxford Nanopore Technologies and the assembly was contiguous. The assembly comprises ten contigs totaling 39.8 Mb with an N50 length of 7.9. In the assembly, 11,602 genes were predicted whereof 10,784 were functionally annotated. A total of 37 rRNA genes were observed in the assembly and repeat elements spanning 7.39% of the genome were found. A total of 99 secondary metabolite gene clusters were predicted, showing a high potential of novel secondary metabolites. This genome sequence will not only be useful for further investigation of the Arthrinium clade, but also for discovery of novel secondary metabolite compounds that could be of high interest for the food, agricultural, or pharmaceutical industry. [ABSTRACT FROM AUTHOR] |
|
Copyright of Genome Biology & Evolution is the property of Oxford University Press / USA and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.) |
قاعدة البيانات: |
Complementary Index |