دورية
Genome-wide characterization and expression analysis of cyclic nucleotide-gated ion channels (CNGCs) gene family in Arabidopsis thalianaL. and Helianthus annuusL. for drought stress
| العنوان: | Genome-wide characterization and expression analysis of cyclic nucleotide-gated ion channels (CNGCs) gene family in Arabidopsis thalianaL. and Helianthus annuusL. for drought stress |
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| المؤلفون: | Oranab, Sadaf, Ahmad, Hafiz Muhammad, Fiaz, Sajid, Hussain, Athar, Rizwan, Muhammad, Arif, Shazia, Ishaq, Saira, Zakia, Shahnaz, Abushady, Asmaa M., Kimiko, Itoh, Attia, Kotb A. |
| المصدر: | Brazilian Journal of Botany; 20240101, Issue: Preprints p1-16, 16p |
| مستخلص: | Cyclic nucleotide-gated ion channels (CNGCs) genes play an important role to tolerate the abiotic stress tolerance in crop plants. The present study was designed to compare the molecular aspects of CNCGgenes in Arabidopsis thalianaL. and Helianthus annuusL. using various computational tools. Through protein blast analysis, we identified nine CNGCsin H. annuusand subcellular locations indicated that these genes were unevenly distributed in various cellular components. The phylogenetic analysis of CNGCsgenes was conducted among of A. thaliana, H. annuus, Gossypium hirsutumL., Brassica oleraceaL. and Brassica rapaL. It was noted that in phylogenetic tree CNCG proteins of these crops were divided into four clads. Expression profiling of RNA-seq-data indicated that HanCNGC16and HanCNGC15play putative role under drought stress. The cis-regulatory analysis also identified several stress-responsive elements in HanCNGCs. The comparative genomics provided insights into the evolutionary history, duplication, divergence, gene gain and loss, species relationship, and structural diversity of CNGC in five species. These findings will not only provide widespread implications of CNGCsfor their roles under drought stress in various crop species but also provided a reference study for the CNGCgene family in H. annuus. |
| قاعدة البيانات: | Supplemental Index |
Find this article in full text from Springer Verlag. 
Full Text Finder | تدمد: | 01008404 18069959 |
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| DOI: | 10.1007/s40415-023-00957-x |