Screening and functional prediction of differentially expressed circular RNAs in human glioma of different grades

التفاصيل البيبلوغرافية
العنوان: Screening and functional prediction of differentially expressed circular RNAs in human glioma of different grades
المؤلفون: Wang Xi, Shaoguang Sun, Wentao Yu, Xiuchao Geng, Qiang Li, Yuhao Zhang, Xiaomeng Lin, Hong Wang, Liang Shi
المصدر: Aging (Albany NY)
بيانات النشر: Impact Journals, LLC, 2020.
سنة النشر: 2020
مصطلحات موضوعية: Adult, Male, Aging, Adenosine, RNA-binding protein, Computational biology, Biology, Genome, Open Reading Frames, Predictive Value of Tests, Glioma, microRNA, medicine, Humans, Mass Screening, circRNA, Gene Regulatory Networks, ORFS, Gene, Aged, Brain Chemistry, Brain Neoplasms, Computational Biology, High-Throughput Nucleotide Sequencing, RNA sequencing, RNA, Circular, Cell Biology, Middle Aged, medicine.disease, Gene expression profiling, Open reading frame, functional prediction, Female, Neoplasm Grading, Metabolic Networks and Pathways, Research Paper
الوصف: Circular RNAs (circRNAs) have a critical regulatory function in human glioma. However, novel circRNAs related to different pathological grades of glioma and their crucial potential function are worth screening and prediction. CircRNA expression profiling was performed for 6 paired high- and low-grade glioma tissues and 5 adjacent normal brain tissues through next-generation sequencing. Quantitative real-time PCR (qRT-PCR) was conducted to validate circRNA expression. Bioinformatics analysis was performed, and circRNA-miRNA-mRNA networks were constructed. The expression and survival data of miRNAs and target genes were examined by GEPIA, Chinese Glioma Genome Atlas (CGGA), ONCOMINE, and cBioPortal databases. The RNA binding proteins (RBPs), open reading frames (ORFs) and N6-methyladenosine (m6A) modifications of the identified circRNAs were also predicted. Through multilevel research screening, 4 circRNAs (hsa_circ_0000915, hsa_circ_0127664, hsa_circ_0008362, and hsa_circ_0001467) were associated with glioma of different pathological grades and could be preferred candidates for subsequent functional analysis. Therefore, circRNAs are associated with the different pathological grades of glioma and reveal their potential critical regulatory function. CircRNAs might provide vital molecular biomarkers and potential therapeutic targets for glioma.
تدمد: 1945-4589
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1acac4b5adb97eb8db06c8d8d359740b
https://doi.org/10.18632/aging.202192
حقوق: OPEN
رقم الأكسشن: edsair.doi.dedup.....1acac4b5adb97eb8db06c8d8d359740b
قاعدة البيانات: OpenAIRE