Cross-tissue immune cell analysis reveals tissue-specific features in humans
| العنوان: | Cross-tissue immune cell analysis reveals tissue-specific features in humans |
|---|---|
| المؤلفون: | C. Domínguez Conde, C. Xu, L. B. Jarvis, D. B. Rainbow, S. B. Wells, T. Gomes, S. K. Howlett, O. Suchanek, K. Polanski, H. W. King, L. Mamanova, N. Huang, P. A. Szabo, L. Richardson, L. Bolt, E. S. Fasouli, K. T. Mahbubani, M. Prete, L. Tuck, N. Richoz, Z. K. Tuong, L. Campos, H. S. Mousa, E. J. Needham, S. Pritchard, T. Li, R. Elmentaite, J. Park, E. Rahmani, D. Chen, D. K. Menon, O. A. Bayraktar, L. K. James, K. B. Meyer, N. Yosef, M. R. Clatworthy, P. A. Sims, D. L. Farber, K. Saeb-Parsy, J. L. Jones, S. A. Teichmann |
| المساهمون: | Domínguez Conde, C [0000-0002-8684-4655], Xu, C [0000-0002-6265-999X], Jarvis, LB [0000-0002-5760-0125], Rainbow, DB [0000-0003-4931-3289], Wells, SB [0000-0001-5428-0683], Gomes, T [0000-0003-1333-0191], Howlett, SK [0000-0003-0504-4937], Polanski, K [0000-0002-2586-9576], King, HW [0000-0001-5972-8926], Mamanova, L [0000-0003-1463-8622], Huang, N [0000-0001-8849-038X], Szabo, PA [0000-0003-1603-761X], Richardson, L [0000-0001-9064-1271], Bolt, L [0000-0001-7293-0774], Fasouli, ES [0000-0003-1621-3396], Mahbubani, KT [0000-0002-1327-2334], Prete, M [0000-0002-5946-821X], Tuck, L [0000-0002-1837-7549], Tuong, ZK [0000-0002-6735-6808], Campos, L [0000-0003-2445-7120], Mousa, HS [0000-0002-8327-7114], Needham, EJ [0000-0001-7042-7462], Li, T [0000-0002-8240-4476], Elmentaite, R [0000-0001-7366-5466], Park, J [0000-0002-1687-2423], Chen, D [0000-0002-9710-1857], Menon, DK [0000-0002-3228-9692], James, LK [0000-0002-2252-4636], Meyer, KB [0000-0001-5906-1498], Yosef, N [0000-0001-9004-1225], Clatworthy, MR [0000-0002-3340-9828], Sims, PA [0000-0002-3921-4837], Farber, DL [0000-0001-8236-9183], Saeb-Parsy, K [0000-0002-0633-3696], Jones, JL [0000-0003-4974-1371], Teichmann, SA [0000-0002-6294-6366], Apollo - University of Cambridge Repository, Jarvis, Lorna [0000-0002-5760-0125], Mahbubani, Krishnaa [0000-0002-1327-2334], Tuong, Kelvin [0000-0002-6735-6808], Mousa, Mousa [0000-0002-8327-7114], Menon, David [0000-0002-3228-9692], Clatworthy, Menna [0000-0002-3340-9828], Saeb-Parsy, Kourosh [0000-0002-0633-3696], Jones, Joanna [0000-0003-4974-1371], Teichmann, Sarah [0000-0002-6294-6366] |
| المصدر: | Science |
| بيانات النشر: | American Association for the Advancement of Science (AAAS), 2022. |
| سنة النشر: | 2022 |
| مصطلحات موضوعية: | Machine Learning, B-Lymphocytes, Multidisciplinary, Organ Specificity, Sequence Analysis, RNA, T-Lymphocytes, Humans, Single-Cell Analysis, Transcriptome, Cells, Cultured |
| الوصف: | Despite their crucial role in health and disease, our knowledge of immune cells within human tissues remains limited. We surveyed the immune compartment of 16 tissues from 12 adult donors by single-cell RNA sequencing and VDJ sequencing generating a dataset of ~360,000 cells. To systematically resolve immune cell heterogeneity across tissues, we developed CellTypist, a machine learning tool for rapid and precise cell type annotation. Using this approach, combined with detailed curation, we determined the tissue distribution of finely phenotyped immune cell types, revealing hitherto unappreciated tissue-specific features and clonal architecture of T and B cells. Our multitissue approach lays the foundation for identifying highly resolved immune cell types by leveraging a common reference dataset, tissue-integrated expression analysis, and antigen receptor sequencing. CZI NIH grant ERC grant (Thdefine) |
| وصف الملف: | application/pdf |
| URL الوصول: | https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4b485705daf8e4470b5b527507195036 https://www.repository.cam.ac.uk/handle/1810/338057 |
| حقوق: | OPEN |
| رقم الأكسشن: | edsair.doi.dedup.....4b485705daf8e4470b5b527507195036 |
| قاعدة البيانات: | OpenAIRE |
| الوصف غير متاح. |