Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
| العنوان: | Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
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| المؤلفون: | Seunghee Lee, Jetty S.S. Ammiraju, Railson Schreinert dos Santos, Ann Danowitz, Shu-Min Kao, Li Zhang, Chengjun Zhang, Cheng chieh Wu, Dongying Gao, Carlos E.M. Londono, Scott A. Jackson, Yi Liao, Mingsheng Chen, Chuanzhu Fan, Andrea Zuccolo, Muhua Wang, Christos Noutsos, Rod A. Wing, Manyuan Long, Robert J Henry, Marie-Christine Carpentier, Kshirod K. Jena, Aiko Iwata, Yue-Ie C. Hsing, Jose Luis Goicoechea, Bin Han, Richard Cooke, Joshua C. Stein, Luis F. Rivera, Thomas Wicker, Dario Copetti, Fu Jin Wei, Claude Becker, Paul L. Sanchez, Qi Feng, Andrea R. Gschwend, Ramil Mauleon, Carlos A. Machado, Derrick J. Zwickl, Daniel da Rosa Farias, Jayson Talag, Dave Flowers, Eric Lasserre, Nickolai Alexandrov, Yeisoo Yu, Moaine El Baidouri, Luciano Carlos da Maia, Jeremy Schmutz, Dave Kudrna, Olivier Panaud, Kenneth L. McNally, Xiang Song, Kevin G. Nyberg, Nori Kurata, Qiang Zhao, Kapeel Chougule, Jhih wun Zeng, Antonio Costa de Oliveira, Jianwei Zhang, Doreen Ware, Jun Wang, Detlef Weigel, Sharon Wei, Julie Jacquemin, Michael J. Sanderson |
| المساهمون: | Ecology and Evolutionary Biology [Tucson] (EEB), University of Arizona, Dipartimento Sci Agr & Ambientali, Università degli Studi di Udine - University of Udine [Italie], Wuhan University [China], University of Georgia [USA], Chinese Academy of Agricultural Mechanization Sciences (CCCME), Laboratoire Génome et développement des plantes (LGDP), Université de Perpignan Via Domitia (UPVD)-Centre National de la Recherche Scientifique (CNRS), Gregor Mendel Institute of Molecular Plant Biology (GMI), Austrian Academy of Sciences (OeAW), Tsukuba University of Technology, Graduate School of Comprehensive Human Sciences, Université de Tsukuba = University of Tsukuba, Sismologie (IPGS) (IPGS-Sismologie), Institut de physique du globe de Strasbourg (IPGS), Université de Strasbourg (UNISTRA)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS), United States Department of Energy, Institute of Plant Biology, University of Zurich, Plant Genomics and Breeding Center, Department of Biology, Cold Spring Harbor Laboratory |
| المصدر: | Nature genetics, vol 50, iss 2 Nature Genetics Nature Genetics, Nature Publishing Group, 2018, 50 (2), pp.285-296. ⟨10.1038/s41588-018-0040-0⟩ |
| بيانات النشر: | eScholarship, University of California, 2018. |
| سنة النشر: | 2018 |
| مصطلحات موضوعية: | 0301 basic medicine, Crops, Agricultural, Evolution, Genetic Speciation, [SDV]Life Sciences [q-bio], Plant genetics, Introgression, Genomics, Crops, Oryza, Genome, Medical and Health Sciences, Evolution, Molecular, Domestication, 03 medical and health sciences, Molecular evolution, Phylogenetics, Genetics, ComputingMilieux_MISCELLANEOUS, Phylogeny, Conserved Sequence, 2. Zero hunger, Agricultural, biology, food and beverages, Molecular, Genetic Variation, Plant, 15. Life on land, Biological Sciences, biology.organism_classification, 030104 developmental biology, Evolutionary biology, Genome, Plant, Developmental Biology |
| الوصف: | The genus Oryza is a model system for the study of molecular evolution over time scales ranging from a few thousand to 15 million years. Using 13 reference genomes spanning the Oryza species tree, we show that despite few large-scale chromosomal rearrangements rapid species diversification is mirrored by lineage-specific emergence and turnover of many novel elements, including transposons, and potential new coding and noncoding genes. Our study resolves controversial areas of the Oryza phylogeny, showing a complex history of introgression among different chromosomes in the young 'AA' subclade containing the two domesticated species. This study highlights the prevalence of functionally coupled disease resistance genes and identifies many new haplotypes of potential use for future crop protection. Finally, this study marks a milestone in modern rice research with the release of a complete long-read assembly of IR 8 'Miracle Rice', which relieved famine and drove the Green Revolution in Asia 50 years ago. |
| وصف الملف: | application/pdf |
| تدمد: | 1061-4036 1546-1718 |
| URL الوصول: | https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4e092dbb9a19537bbd53d281805c116a https://escholarship.org/uc/item/69s9j770 |
| حقوق: | OPEN |
| رقم الأكسشن: | edsair.doi.dedup.....4e092dbb9a19537bbd53d281805c116a |
| قاعدة البيانات: | OpenAIRE |
Find this article in full text from Springer Verlag. | تدمد: | 10614036 15461718 |
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