Reclassification of Nocardia species based on whole genome sequence and associated phenotypic data

التفاصيل البيبلوغرافية
العنوان: Reclassification of Nocardia species based on whole genome sequence and associated phenotypic data
المؤلفون: Tohru Gonoi, Tetsuhiro Matsuzawa, Hisayuki Komaki, Ken-ichiro Suzuki, Natsuko Ichikawa, Tomohiko Tamura, Chiyo Shibata, Shoko Ohji, Akira Hosoyama, Atsushi Yamazoe, Moriyuki Hamada, Nobuyuki Fujita
المصدر: The Journal of antibiotics. 71(7)
سنة النشر: 2017
مصطلحات موضوعية: 0301 basic medicine, Pharmacology, Whole genome sequencing, DNA, Bacterial, biology, Genotype, Whole Genome Sequencing, Sequence analysis, Nocardia ignorata, biology.organism_classification, Phenotype, Nocardia, Microbiology, Bacterial Typing Techniques, 03 medical and health sciences, 030104 developmental biology, Synonym (taxonomy), Phylogenetics, Drug Discovery, Multilocus sequence typing, Clade, Genome, Bacterial, Phylogeny, Multilocus Sequence Typing
الوصف: Type strains of 72 validated Nocardia species were phylogenetically analyzed based on the multilocus sequence analysis (MLSA) concatenated atpD-groL1-groL2-recA-rpoA-secY-sodA-ychF. Furthermore, their similarity based on digital DNA-DNA hybridization (dDDH) was calculated. Nocardia soli, Nocardia cummidelens and Nocardia salmonicida, Nocardia nova and Nocardia elegans, Nocardia exalbida and Nocardia gamkensis, and Nocardia coubleae and Nocardia ignorata formed coherent clades, respectively. Moreover, each set showed over 70% relatedness by dDDH and shared common phenotypic characteristics. Therefore, we propose a reclassification of Nocardia soli and Nocardia cummidelens as a later heterotypic synonym of Nocardia salmonicida, Nocardia elegans as a later heterotypic synonym of Nocardia nova, Nocardia gamkensis as a later heterotypic synonym of Nocardia exalbida, and Nocardia coubleae as a later heterotypic synonym of Nocardia ignorata.
تدمد: 1881-1469
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::55f3f3d9e8400d59e0a8389bd6a6786a
https://pubmed.ncbi.nlm.nih.gov/29618770
حقوق: CLOSED
رقم الأكسشن: edsair.doi.dedup.....55f3f3d9e8400d59e0a8389bd6a6786a
قاعدة البيانات: OpenAIRE