Expression Atlas update: gene and protein expression in multiple species
| العنوان: | Expression Atlas update: gene and protein expression in multiple species |
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| المؤلفون: | John C. Marioni, Jana Eliasova, Alfonso Munoz-Pomer, Upendra Kumbham, David García-Seisdedos, Sunita Kumari, Zhichiao Miao, Doreen Ware, Marcela K. Tello-Ruiz, Anja Füllgrabe, Sarah A. Teichmann, Tony Burdett, Suhaib Mohammed, Mathias Walzer, David Osumi-Sutherland, Juan Antonio Vizcaíno, Kerstin B. Meyer, Natassja Bush, Jonathan R. Manning, Lingyun Zhao, Deepti J. Kundu, Laura Clarke, Irene Papatheodorou, Alvis Brazma, Pablo Moreno, Haider Iqbal, Nancy George, Ananth Prakash, Silvie Fexova, Shengbo Wang, Andrey Solovyev, Martijn C. Nawijn, Yalan Bi, Mark J. Arends |
| المساهمون: | Moreno, Pablo [0000-0002-9856-1679], Miao, Zhichiao [0000-0002-5777-9815], Fullgrabe, Anja [0000-0002-8674-0039], Clarke, Laura [0000-0002-5989-6898], Tello-Ruiz, Marcela Karey [0000-0002-7499-5368], Burdett, Tony [0000-0002-2513-5396], Marioni, John [0000-0001-9092-0852], Vizcaíno, Juan Antonio [0000-0002-3905-4335], Papatheodorou, Irene [0000-0001-7270-5470], Apollo - University of Cambridge Repository, Groningen Research Institute for Asthma and COPD (GRIAC) |
| المصدر: | Nucleic Acid Research Nucleic Acids Research, 50(D1):gkab1030, 129-140. Oxford University Press Moreno, P, Fexova, S, George, N, Manning, J R, Miao, Z, Mohammed, S, Muñoz-pomer, A, Fullgrabe, A, Bi, Y, Bush, N, Iqbal, H, Kumbham, U, Solovyev, A, Zhao, L, Prakash, A, García-seisdedos, D, Kundu, D, Wang, S, Walzer, M, Clarke, L, Osumi-sutherland, D, Tello-ruiz, M, Kumari, S, Ware, D, Eliasova, J, Arends, M, Nawijn, M, Meyer, K, Burdett, T, Marioni, J, Teichmann, S, Vizcaíno, J, Brazma, A & Papatheodorou, I 2021, ' Expression Atlas update : gene and protein expression in multiple species ', Nucleic Acids Research, vol. 50, no. D1, pp. D129-D140 . https://doi.org/10.1093/nar/gkab1030 Nucleic Acids Research |
| بيانات النشر: | Oxford University Press (OUP), 2022. |
| سنة النشر: | 2022 |
| مصطلحات موضوعية: | Proteomics, Developmental stage, AcademicSubjects/SCI00010, Atlas (topology), Sequence Analysis, RNA, Gene Expression Profiling, Computational Biology, Proteins, Computational biology, Biology, Expression (computer science), Multiple species, Metadata, Databases, Genetic, Genetics, Database Issue, Gene and protein expression, Humans, RNA-Seq, Single-Cell Analysis, Gene, Software |
| الوصف: | The EMBL-EBI Expression Atlas is an added value knowledge base that enables researchers to answer the question of where (tissue, organism part, developmental stage, cell type) and under which conditions (disease, treatment, gender, etc) a gene or protein of interest is expressed. Expression Atlas brings together data from >4500 expression studies from >65 different species, across different conditions and tissues. It makes these data freely available in an easy to visualise form, after expert curation to accurately represent the intended experimental design, re-analysed via standardised pipelines that rely on open-source community developed tools. Each study's metadata are annotated using ontologies. The data are re-analyzed with the aim of reproducing the original conclusions of the underlying experiments. Expression Atlas is currently divided into Bulk Expression Atlas and Single Cell Expression Atlas. Expression Atlas contains data from differential studies (microarray and bulk RNA-Seq) and baseline studies (bulk RNA-Seq and proteomics), whereas Single Cell Expression Atlas is currently dedicated to Single Cell RNA-Sequencing (scRNA-Seq) studies. The resource has been in continuous development since 2009 and it is available at https://www.ebi.ac.uk/gxa. |
| وصف الملف: | application/pdf |
| تدمد: | 0305-1048 |
| URL الوصول: | https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6df3657a122c18e66f9e4d8b29f9d492 https://www.repository.cam.ac.uk/handle/1810/333881 |
| حقوق: | OPEN |
| رقم الأكسشن: | edsair.doi.dedup.....6df3657a122c18e66f9e4d8b29f9d492 |
| قاعدة البيانات: | OpenAIRE |
| تدمد: | 03051048 |
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