The genome sequence of star fruit (Averrhoa carambola)
| العنوان: | The genome sequence of star fruit (Averrhoa carambola) |
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| المؤلفون: | Diyang Zhang, Wei Sun, Yu Yun Hsiao, Lei Chen, Sha-Sha Wu, Xinyu Xie, Junhao Chen, Mengxia Cao, Peng Donghui, Hui Ren, Jianwen Dong, Zhichao Xu, Si-Ren Lan, Zhong-Wu Dai, Xiaoyu Dai, Wen Chieh Tsai, Li-Ming Shen, Shilin Chen, Xiaoping Li, Jun-Wen Zhai, Chengru Li, Xue-Die Liu, Xiaoqian Wu, Yamei Zhao, Zhong-Jian Liu |
| المصدر: | Horticulture Research |
| بيانات النشر: | Nature Publishing Group UK, 2020. |
| سنة النشر: | 2020 |
| مصطلحات موضوعية: | 0106 biological sciences, 0301 basic medicine, Evolution, Evolutionary biology, Plant Science, Horticulture, 01 natural sciences, Biochemistry, Genome, Averrhoa carambola, Article, 03 medical and health sciences, Genetics, Gene family, Gene, Whole genome sequencing, Oxalidaceae, biology, biology.organism_classification, WRKY protein domain, 030104 developmental biology, Averrhoa, 010606 plant biology & botany, Biotechnology |
| الوصف: | Oxalidaceae is one of the most important plant families in horticulture, and its key commercially relevant genus, Averrhoa, has diverse growth habits and fruit types. Here, we describe the assembly of a high-quality chromosome-scale genome sequence for Averrhoa carambola (star fruit). Ks distribution analysis showed that A. carambola underwent a whole-genome triplication event, i.e., the gamma event shared by most eudicots. Comparisons between A. carambola and other angiosperms also permitted the generation of Oxalidaceae gene annotations. We identified unique gene families and analyzed gene family expansion and contraction. This analysis revealed significant changes in MADS-box gene family content, which might be related to the cauliflory of A. carambola. In addition, we identified and analyzed a total of 204 nucleotide-binding site, leucine-rich repeat receptor (NLR) genes and 58 WRKY genes in the genome, which may be related to the defense response. Our results provide insights into the origin, evolution and diversification of star fruit. |
| اللغة: | English |
| تدمد: | 2052-7276 2662-6810 |
| URL الوصول: | https://explore.openaire.eu/search/publication?articleId=doi_dedup___::953713df5760e59a800bc31bdf7a1cda http://europepmc.org/articles/PMC7261771 |
| حقوق: | OPEN |
| رقم الأكسشن: | edsair.doi.dedup.....953713df5760e59a800bc31bdf7a1cda |
| قاعدة البيانات: | OpenAIRE |
| تدمد: | 20527276 26626810 |
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