Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises
| العنوان: | Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises |
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| المؤلفون: | Deborah Sheehan, Eija Trees, Ruth Timme, Ashley Sabol, Errol Strain, Maria Hoffmann, Jennifer K. Adams, Maria Balkey, Rebecca L. Lindsey, Hugh Rand, Joseph D. Baugher, Patricia C. Lafon, Darlene Wagner, Heather A. Carleton |
| المصدر: | Scientific Data Scientific Data, Vol 7, Iss 1, Pp 1-5 (2020) |
| بيانات النشر: | Springer Science and Business Media LLC, 2020. |
| سنة النشر: | 2020 |
| مصطلحات موضوعية: | Statistics and Probability, Data Descriptor, Food Safety, Computer science, Genomic data, Proficiency test, Library and Information Sciences, Education, 03 medical and health sciences, 0302 clinical medicine, Escherichia coli, lcsh:Science, 030304 developmental biology, 0303 health sciences, Foodborne pathogen, business.industry, Pulsenet, Salmonella enterica, Campylobacter, Genomics, Food safety, Listeria monocytogenes, United States, Computer Science Applications, Biotechnology, 030220 oncology & carcinogenesis, Food Microbiology, lcsh:Q, Bacterial infection, Pathogens, Statistics, Probability and Uncertainty, Laboratories, business, Raw data, Data release, Genome, Bacterial, Standard operating procedure, Information Systems |
| الوصف: | The US PulseNet and GenomeTrakr laboratory networks work together within the Genomics for Food Safety (Gen-FS) consortium to collect and analyze genomic data for foodborne pathogen surveillance (species include Salmonella enterica, Listeria monocytogenes, Escherichia coli (STECs), and Campylobactor). In 2017 these two laboratory networks started harmonizing their respective proficiency test exercises, agreeing on distributing a single strain-set and following the same standard operating procedure (SOP) for genomic data collection, running a jointly coordinated annual proficiency test exercise. In this data release we are publishing the reference genomes and raw data submissions for the 2017 and 2018 proficiency test exercises. Measurement(s) DNA • genome • sequence_assembly Technology Type(s) DNA sequencing • sequence assembly process Factor Type(s) species of foodborne pathogen Sample Characteristic - Organism Salmonella enterica • Escherichia coli • Listeria monocytogenes Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.13135046 |
| تدمد: | 2052-4463 |
| URL الوصول: | https://explore.openaire.eu/search/publication?articleId=doi_dedup___::caa50dfc100a55289fb06754bf2bc3de https://doi.org/10.1038/s41597-020-00740-7 |
| حقوق: | OPEN |
| رقم الأكسشن: | edsair.doi.dedup.....caa50dfc100a55289fb06754bf2bc3de |
| قاعدة البيانات: | OpenAIRE |
| تدمد: | 20524463 |
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