Integrative annotation of variants from 1092 humans: application to cancer genomics
| العنوان: | Integrative annotation of variants from 1092 humans: application to cancer genomics |
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| المؤلفون: | Khurana, E., Fu, Y., Colonna, V., Mu, X., Kang, H., Lappalainen, T., Sboner, A., Lochovsky, L., Chen, J., Harmanci, A., Das, J., Abyzov, A., Balasubramanian, S., Beal, K., Chakravarty, D., Challis, D., Chen, Y., Clarke, D., Clarke, L., Cunningham, F., Evani, U., Flicek, P., Fragoza, R., Garrison, E., Gibbs, R., Gumus, Z., Herrero, J., Kitabayashi, N., Kong, Y., Lage, K., Liluashvili, V., Lipkin, S., MacArthur, D., Marth, G., Muzny, D., Pers, T., Ritchie, G., Rosenfeld, J., Sisu, C., Wei, X., Wilson, M., Xue, Y., Yu, F., 1000 Genomes Project, C., Lehrach, H., Sudbrak, R., Albrecht, M., Amstislavskiy, V., Borodina, T., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M., Dermitzakis, E., Yu, H., Rubin, M., Tyler-Smith, C., Gerstein, M. |
| المساهمون: | Broad Institute of MIT and Harvard |
| المصدر: | Science, Vol. 342, No 6154 (2013) P. 1235587 Science (N. Y., N.Y.) 342 (2013): 84–+. doi:10.1126/science.1235587 info:cnr-pdr/source/autori:Khurana, Ekta; Fu, Yao; Colonna, Vincenza; Mu, Xinmeng Jasmine; Kang, Hyun Min; Lappalainen, Tuuli; Sboner, Andrea; Lochovsky, Lucas; Chen, Jieming; Harmanci, Arif; Das, Jishnu; Abyzov, Alexej; Balasubramanian, Suganthi; Beal, Kathryn; Chakravarty, Dimple; Challis, Daniel; Chen, Yuan; Clarke, Declan; Clarke, Laura; Cunningham, Fiona; Evani, Uday S.; Flicek, Paul; Fragoza, Robert; Garrison, Erik; Gibbs, Richard; Guemues, Zeynep H.; Herrero, Javier; Kitabayashi, Naoki; Kong, Yong; Lage, Kasper; Liluashvili, Vaja; Lipkin, Steven M.; MacArthur, Daniel G.; Marth, Gabor; Muzny, Donna; Pers, Tune H.; Ritchie, Graham R. S.; Rosenfeld, Jeffrey A.; Sisu, Cristina; Wei, Xiaomu; Wilson, Michael; Xue, Yali; Yu, Fuli; Dermitzakis, Emmanouil T.; Yu, Haiyuan; Rubin, Mark A.; Tyler-Smith, Chris; Gerstein, Mark/titolo:Integrative Annotation of Variants from 1092 Humans: Application to Cancer Genomics/doi:10.1126%2Fscience.1235587/rivista:Science (N. Y., N.Y.)/anno:2013/pagina_da:84/pagina_a:+/intervallo_pagine:84–+/volume:342 PMC Science |
| سنة النشر: | 2013 |
| مصطلحات موضوعية: | RNA, Untranslated, Population, Kruppel-Like Transcription Factors, Molecular Sequence Annotation/methods, RNA, Untranslated/genetics, Genomics, Computational biology, Biology, medicine.disease_cause, Genome, Binding Sites/genetics, Polymorphism, Single Nucleotide, Article, Population/genetics, Neoplasms, medicine, Humans, ddc:576.5, Selection, Genetic, education, Enhancer, Genetics, Mutation, education.field_of_study, Binding Sites, Multidisciplinary, Natural selection, Genome, Human, Genetic Variation, Molecular Sequence Annotation, Neoplasms/genetics, Human genome, Kruppel-Like Transcription Factors/metabolism |
| الوصف: | Identifying Important Identifiers Each of us has millions of sequence variations in our genomes. Signatures of purifying or negative selection should help identify which of those variations is functionally important. Khurana et al. ( 1235587 ) used sequence polymorphisms from 1092 humans across 14 populations to identify patterns of selection, especially in noncoding regulatory regions. Noncoding regions under very strong negative selection included binding sites of some chromatin and general transcription factors (TFs) and core motifs of some important TF families. Positive selection in TF binding sites tended to occur in network hub promoters. Many recurrent somatic cancer variants occurred in noncoding regulatory regions and thus might indicate mutations that drive cancer. |
| وصف الملف: | application/pdf |
| اللغة: | English |
| تدمد: | 0036-8075 |
| URL الوصول: | https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ed289199d0df8db0bb670ebaea2adeb8 https://archive-ouverte.unige.ch/unige:90279 |
| حقوق: | OPEN |
| رقم الأكسشن: | edsair.doi.dedup.....ed289199d0df8db0bb670ebaea2adeb8 |
| قاعدة البيانات: | OpenAIRE |
| تدمد: | 00368075 |
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