This paper describes the sampling and analysis of biogeochemical parameters collected in the Rockall Trough in January/February of 2009, 2010, 2011 and 2012. Sampling was carried out along two transects, one southern and one northern transect each year. Samples for dissolved inorganic carbon (DIC) and total alkalinity (TA) were taken alongside salinity, dissolved oxygen and dissolved inorganic nutrients (total-oxidized nitrogen, nitrite, phosphate and silicate) to describe the chemical signatures of the various water masses in the region. These were taken at regular intervals through the water column. The data are available on the CDIAC database, http://cdiac.ornl.gov/ftp/oceans/Rockall_Trough/.