X-ray scattering and molecular dynamics simulations reveal the secondary structure of κ-carrageenan in the solution state

التفاصيل البيبلوغرافية
العنوان: X-ray scattering and molecular dynamics simulations reveal the secondary structure of κ-carrageenan in the solution state
المؤلفون: Benjamin P. Westberry, Bradley W. Mansel, Timothy M. Ryan, Leif Lundin, M.A.K. Williams
المصدر: Carbohydrate polymers. 296
سنة النشر: 2021
مصطلحات موضوعية: Ions, Polymers and Plastics, X-Rays, Organic Chemistry, Materials Chemistry, Molecular Dynamics Simulation, Carrageenan, Protein Structure, Secondary
الوصف: The solution state structure of κ-carrageenan is typically described as a 'random coil', to indicate a lack of defined secondary structure elements. From this starting point the assignment of an optical-rotation-detected change that follows the introduction of particular ions to such solutions as a 'coil-to-helix transition' seems unambiguous, and thus the canonical description of this important biopolymer's gelling behaviour was born. However, the notion that κ-carrageenan exists in solution as a random coil, devoid of secondary structure, has been questioned a number of times previously in the literature, particularly by the molecular modelling and NMR communities. Regrettably, there has been little desire to-date to address these largely overlooked studies or consider their implications for the nature of the so-called 'coil-to-helix transition'. Despite evidence to the contrary, the random-coil-paradigm has prevailed. Here, new data from synchrotron-enabled solution-state x-ray scattering experiments, combined with state-of-the-art atomistic molecular dynamics simulations, are used to show that the solution-state structure of κ-carrageenan in fact retains many of the helical motifs present in the solid-state, as inferred from fibre diffraction data. Furthermore, no evidence is found to suggest that single chains undergo any uni-molecular conformational transition upon the addition of ions. These findings once again challenge the paradigm that κ-carrageenan exists as a 'random coil' in the solution state, and thereby question the long held assumption that a uni-molecular 'coil-to-helix transition' precedes the dimerization of helices.
تدمد: 1879-1344
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f97b1cadb82ff8fc8f58b4be0df73f88
https://pubmed.ncbi.nlm.nih.gov/36088000
حقوق: CLOSED
رقم الأكسشن: edsair.doi.dedup.....f97b1cadb82ff8fc8f58b4be0df73f88
قاعدة البيانات: OpenAIRE