PiNN: A Python Library for Building Atomic Neural Networks of Molecules and Materials

التفاصيل البيبلوغرافية
العنوان: PiNN: A Python Library for Building Atomic Neural Networks of Molecules and Materials
المؤلفون: Yunqi, Shao, Matti, Hellström, Pavlin D, Mitev, Lisanne, Knijff, Chao, Zhang
المصدر: Journal of chemical information and modeling. 60(3)
سنة النشر: 2020
مصطلحات موضوعية: Machine Learning, Computer Simulation, Neural Networks, Computer, Software, Gene Library
الوصف: Atomic neural networks (ANNs) constitute a class of machine learning methods for predicting potential energy surfaces and physicochemical properties of molecules and materials. Despite many successes, developing interpretable ANN architectures and implementing existing ones efficiently are still challenging. This calls for reliable, general-purpose, and open-source codes. Here, we present a python library named PiNN as a solution toward this goal. In PiNN, we designed a new interpretable and high-performing graph convolutional neural network variant, PiNet, as well as implemented the established Behler-Parrinello neural network. These implementations were tested using datasets of isolated small molecules, crystalline materials, liquid water, and an aqueous alkaline electrolyte. PiNN comes with a visualizer called PiNNBoard to extract chemical insight "learned" by ANNs. It provides analytical stress tensor calculations and interfaces to both the atomic simulation environment and a development version of the Amsterdam Modeling Suite. Moreover, PiNN is highly modularized, which makes it useful not only as a standalone package but also as a chain of tools to develop and to implement novel ANNs. The code is distributed under a permissive BSD license and is freely accessible at https://github.com/Teoroo-CMC/PiNN/ with full documentation and tutorials.
تدمد: 1549-960X
URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::14c57f6c49baf0f977673cf4e6757c09
https://pubmed.ncbi.nlm.nih.gov/31935100
رقم الأكسشن: edsair.pmid..........14c57f6c49baf0f977673cf4e6757c09
قاعدة البيانات: OpenAIRE