Trends in molecular diagnosis and diversity studies for phytosanitary regulated Xanthomonas
| العنوان: | Trends in molecular diagnosis and diversity studies for phytosanitary regulated Xanthomonas |
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| المؤلفون: | Catara, Vittoria, Cubero, Jaime, Pothier, Joël F., Bosis, Eran, Bragard, Claude, Đermić, Edyta, Holeva, Maria C., Jacques, Marie-Agnès, Petter, Francoise, Pruvost, Olivier, Robène, Isabelle, Studholme, David J., Tavares, Fernando, Vicente, Joana G., Koebnik, Ralf, Costa, Joana |
| المساهمون: | Università degli Studi di Catania, Agencia Estatal de Investigación (España), European Commission, University of Zurich, Scottish Government, Catara, Vittoria, Cubero, Jaime, Pothier, Joël F., Bosis, Eran, Bragard, Claude, Đermić, Edyta, Holeva, Maria C., Jacques, Marie-Agnès, Petter, Francoise, Pruvost, Olivier, Robène, Isabelle, Studholme, David J., Tavares, Fernando, Vicente, Joana G., Koebnik, Ralf, Costa, Joana, University of Catania [Italy], Department of Agriculture, Food and Environment, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria = National Institute for Agricultural and Food Research and Technology (INIA), Zürich University of Applied Sciences (ZHAW), ORT Braude College [Karmiel, Israel], Earth and Life Institute [Louvain-La-Neuve] (ELI), Université Catholique de Louvain = Catholic University of Louvain (UCL), Faculty of Agriculture [Zagreb] (UNIZG), University of Zagreb, Benaki Phytopathological Institute, Institut de Recherche en Horticulture et Semences (IRHS), Université d'Angers (UA)-AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), European and Mediterranean Plant Protection Organization - Organisation Européenne et Méditerranéenne pour la Protection des Plantes (EPPO), Peuplements végétaux et bioagresseurs en milieu tropical (UMR PVBMT), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD)-Université de La Réunion (UR)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Département Systèmes Biologiques (Cirad-BIOS), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad), University of Exeter, Biosciences, College of Life and Environmental Sciences, Faculdade de Ciências da Universidade do Porto (FCUP), Universidade do Porto, Centro de Investigacão em Biodiversidade e Recursos Genéticos (CIBIO), Fera Science Ltd, Plant Health Institute of Montpellier (UMR PHIM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD)-Université de Montpellier (UM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), University of Coimbra [Portugal] (UC), Centre for Functional Ecology, Instituto Pedro Nunes (IPN), J.C. (Joana Costa) acknowledges R&D Unit Center for Functional Ecology-Science for People and the Planet (CFE), with reference UIDB/04004/2020, financed by FCT/MCTES through national funds (PIDDAC). V.C. acknowledges support of the University of Catania PIA.CE.RI. 2020–2022Linea 2-Research Project MEDIT-ECO. J.C. acknowledges support from AEI by RTI 2018-096018-R-C31 and FEDER. O.P. and I.R. acknowledge the European Union (ERDF, EAFRD) and Réunion regional council for support. J.F.P. acknowledges support from the Department of Life Sciences and Facility Management of the Zurich University of Applied Sciences (ZHAW) in Wädenswil. D.J.S. and J.G.V. also acknowledge joint funding by a grant from BBSRC, NERC, Defra, and the Scottish Government, under the Strategic Priorities Fund Plant Bacterial Diseases programme under the project ‘Xanthomonas plants diseases: mitigating existing, emerging and future threats to UK agriculture’ (BB/T010916/1 and BB/T010908/1). The APC was funded by COST (European Cooperation inScience and technology)., Benaki Phytopathological Institute (BPI), Université d'Angers (UA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-INSTITUT AGRO Agrocampus Ouest, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Universidade do Porto = University of Porto, Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD)-Université de Montpellier (UM)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro - Montpellier SupAgro, Centre for Functional ecology, UCL - SST/ELI/ELIM - Applied Microbiology |
| المصدر: | Microorganisms Microorganisms, Vol 9, Iss 862, p 862 (2021) Microorganisms, MDPI, 2021, 9 (4), pp.862. ⟨10.3390/microorganisms9040862⟩ Microorganisms, 2021, 9 (4), pp.862. ⟨10.3390/microorganisms9040862⟩ Microorganisms, Vol. 9, no.4, p. 862 (2021) |
| بيانات النشر: | MDPI, 2021. |
| سنة النشر: | 2021 |
| مصطلحات موضوعية: | Xanthomonas, QH301-705.5, Review, molecular methods, Maladie des plantes, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], [SDV.BV]Life Sciences [q-bio]/Vegetal Biology, Diagnostic, Biology (General), H20 - Maladies des plantes, Regulated non-quarantine pests, 572: Biochemie, Biotechnologie végétale, [SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology, Maladie bactérienne, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, quarantine pests, Molecular methods, Quarantine pests, 579: Mikrobiologie, Mesure phytosanitaire, regulated non-quarantine pests |
| الوصف: | 30 Pág. Departamento de Protección Vegetal (INIA) Bacteria in the genus Xanthomonas infect a wide range of crops and wild plants, with most species responsible for plant diseases that have a global economic and environmental impact on the seed, plant, and food trade. Infections by Xanthomonas spp. cause a wide variety of non-specific symptoms, making their identification difficult. The coexistence of phylogenetically close strains, but drastically different in their phenotype, poses an added challenge to diagnosis. Data on future climate change scenarios predict an increase in the severity of epidemics and a geographical expansion of pathogens, increasing pressure on plant health services. In this context, the effectiveness of integrated disease management strategies strongly depends on the availability of rapid, sensitive, and specific diagnostic methods. The accumulation of genomic information in recent years has facilitated the identification of new DNA markers, a cornerstone for the development of more sensitive and specific methods. Nevertheless, the challenges that the taxonomic complexity of this genus represents in terms of diagnosis together with the fact that within the same bacterial species, groups of strains may interact with distinct host species demonstrate that there is still a long way to go. In this review, we describe and discuss the current molecular-based methods for the diagnosis and detection of regulated Xanthomonas, taxonomic and diversity studies in Xanthomonas and genomic approaches for molecular diagnosis. J.C. (Joana Costa) acknowledges R&D Unit Center for Functional Ecology-Science for People and the Planet (CFE), with reference UIDB/04004/2020, financed by FCT/MCTES through national funds (PIDDAC). V.C. acknowledges support of the University of Catania PIA.CE.RI. 2020–2022 Linea 2-Research Project MEDIT-ECO. J.C. acknowledges support from AEI by RTI2018-096018-R-C31 and FEDER. O.P. and I.R. acknowledge the European Union (ERDF, EAFRD) and Réunion regional council for support. J.F.P. acknowledges support from the Department of Life Sciences and Facility Management of the Zurich University of Applied Sciences (ZHAW) in Wädenswil. D.J.S. and J.G.V. also acknowledge joint funding by a grant from BBSRC, NERC, Defra, and the Scottish Government, under the Strategic Priorities Fund Plant Bacterial Diseases programme under the project ‘Xanthomonas plants diseases: mitigating existing, emerging and future threats to UK agriculture’ (BB/T010916/1 and BB/T010908/1). The APC was funded by COST (European Cooperation in Science and technology). |
| وصف الملف: | application/pdf; text |
| اللغة: | English |
| تدمد: | 2076-2607 |
| URL الوصول: | https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::f8b36365ae31e4b05f049e50e87fadde https://hdl.handle.net/11475/22300 |
| حقوق: | OPEN |
| رقم الأكسشن: | edsair.pmid.dedup....f8b36365ae31e4b05f049e50e87fadde |
| قاعدة البيانات: | OpenAIRE |
| تدمد: | 20762607 |
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