Explicit models of motions to understand protein side-chain dynamics

التفاصيل البيبلوغرافية
العنوان: Explicit models of motions to understand protein side-chain dynamics
المؤلفون: Bolik-Coulon, Nicolas, Languin-Cattoën, Olivier, Carnevale, Diego, Zachrdla, Milan, Laage, Damien, Sterpone, Fabio, Stirnemann, Guillaume, Ferrage, Fabien
سنة النشر: 2022
المجموعة: Physics (Other)
مصطلحات موضوعية: Physics - Chemical Physics
الوصف: Nuclear magnetic relaxation is widely used to probe protein dynamics. For decades, most analyses of relaxation in proteins have relied successfully on the model-free approach, forgoing mechanistic descriptions of motions. Model-free types of correlation functions cannot describe a large carbon-13 relaxation dataset in protein sidechains. Here, we use molecular dynamics simulations to design explicit models of motion and solve Fokker-Planck diffusion equations. These models of motion provide better agreement with relaxation data, mechanistic insight and a direct link to configuration entropy.
نوع الوثيقة: Working Paper
DOI: 10.1103/PhysRevLett.129.203001
URL الوصول: http://arxiv.org/abs/2204.05813
رقم الأكسشن: edsarx.2204.05813
قاعدة البيانات: arXiv
الوصف
DOI:10.1103/PhysRevLett.129.203001