Colorectal cancer survival prediction using deep distribution based multiple-instance learning

التفاصيل البيبلوغرافية
العنوان: Colorectal cancer survival prediction using deep distribution based multiple-instance learning
المؤلفون: Li, Xingyu, Jonnagaddala, Jitendra, Cen, Min, Zhang, Hong, Xu, Xu Steven
سنة النشر: 2022
المجموعة: Computer Science
مصطلحات موضوعية: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition
الوصف: Several deep learning algorithms have been developed to predict survival of cancer patients using whole slide images (WSIs).However, identification of image phenotypes within the WSIs that are relevant to patient survival and disease progression is difficult for both clinicians, and deep learning algorithms. Most deep learning based Multiple Instance Learning (MIL) algorithms for survival prediction use either top instances (e.g., maxpooling) or top/bottom instances (e.g., MesoNet) to identify image phenotypes. In this study, we hypothesize that wholistic information of the distribution of the patch scores within a WSI can predict the cancer survival better. We developed a distribution based multiple-instance survival learning algorithm (DeepDisMISL) to validate this hypothesis. We designed and executed experiments using two large international colorectal cancer WSIs datasets - MCO CRC and TCGA COAD-READ. Our results suggest that the more information about the distribution of the patch scores for a WSI, the better is the prediction performance. Including multiple neighborhood instances around each selected distribution location (e.g., percentiles) could further improve the prediction. DeepDisMISL demonstrated superior predictive ability compared to other recently published, state-of-the-art algorithms. Furthermore, our algorithm is interpretable and could assist in understanding the relationship between cancer morphological phenotypes and patients cancer survival risk.
نوع الوثيقة: Working Paper
DOI: 10.3390/e24111669
URL الوصول: http://arxiv.org/abs/2204.11294
رقم الأكسشن: edsarx.2204.11294
قاعدة البيانات: arXiv