This paper presents the outcome of a study focused on the evolution of internal damage in fresh cement mortar over 25 hours of hardening. In situ timelapse X-ray computed micro-tomography ({\mu}XCT) imaging method was used to detect internal damage and capture its evolution in cement mortar hardening. During {\mu}XCT scans, the temperature released during the cement hydration was measured, which provided insight into the internal damage evolution with a link to a hydration temperature rise. The measured temperature during cement mortar hardening was compared with an analytical model, which showed a relatively good agreement with the experimental data. Using 20 CT scans acquired throughout the observed cement mortar hardening, it was possible to obtain a quantified characterisation of the porous space. Additionally, the use of timelapse {\mu}XCT imaging over 25 hours allowed for studying the crack growth inside the meso-structure including its volume and surface characterisation. The results provide valuable insights into cement mortar shrinkage and serve as a proof-of-concept methodology for future material characterisation.